Hb_001621_010

Information

Type -
Description -
Location Contig1621: 3123-15976
Sequence    

Annotation

kegg
ID cit:102615432
description uncharacterized LOC102615432
nr
ID XP_006484313.1
description PREDICTED: uncharacterized protein LOC102615432 [Citrus sinensis]
swissprot
ID Q9FL08
description WAT1-related protein At5g40240 OS=Arabidopsis thaliana GN=At5g40240 PE=2 SV=1
trembl
ID A0A067JP63
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21790 PE=4 SV=1
Gene Ontology
ID GO:0016021
description auxin-induced protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14610: 3058-3485 , PASA_asmbl_14611: 3745-4122 , PASA_asmbl_14612: 8356-10751 , PASA_asmbl_14614: 11103-13697 , PASA_asmbl_14615: 13740-15994
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001621_010 0.0 - - PREDICTED: uncharacterized protein LOC102615432 [Citrus sinensis]
2 Hb_000139_340 0.1668586036 - - conserved hypothetical protein [Ricinus communis]
3 Hb_073171_100 0.1822322624 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
4 Hb_027380_200 0.1851717765 transcription factor TF Family: ARF PREDICTED: auxin response factor 6 isoform X2 [Jatropha curcas]
5 Hb_000172_190 0.1861427595 - - PREDICTED: uncharacterized protein LOC105650824 [Jatropha curcas]
6 Hb_012317_020 0.1921964472 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
7 Hb_004453_080 0.1953080811 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
8 Hb_005015_110 0.1966509749 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Jatropha curcas]
9 Hb_006816_480 0.1971818077 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
10 Hb_180378_010 0.1984041036 - - PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic [Populus euphratica]
11 Hb_028707_070 0.1996518315 - - short-chain dehydrogenase, putative [Ricinus communis]
12 Hb_100147_010 0.1999014891 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
13 Hb_000983_080 0.2035533566 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
14 Hb_000828_050 0.2041691246 - - unnamed protein product [Vitis vinifera]
15 Hb_006501_160 0.204481184 - - PREDICTED: hexokinase-1-like [Jatropha curcas]
16 Hb_000251_030 0.204929372 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
17 Hb_003207_010 0.2055000115 - - PREDICTED: phospholipase D beta 1-like [Jatropha curcas]
18 Hb_028487_170 0.2060994597 - - PREDICTED: uncharacterized protein LOC105634088 [Jatropha curcas]
19 Hb_094970_010 0.2062652367 - - PREDICTED: quinolinate synthase, chloroplastic [Jatropha curcas]
20 Hb_002539_020 0.2078344955 - - hypothetical protein CISIN_1g007216mg [Citrus sinensis]

Gene co-expression network

sample Hb_001621_010 Hb_001621_010 Hb_000139_340 Hb_000139_340 Hb_001621_010--Hb_000139_340 Hb_073171_100 Hb_073171_100 Hb_001621_010--Hb_073171_100 Hb_027380_200 Hb_027380_200 Hb_001621_010--Hb_027380_200 Hb_000172_190 Hb_000172_190 Hb_001621_010--Hb_000172_190 Hb_012317_020 Hb_012317_020 Hb_001621_010--Hb_012317_020 Hb_004453_080 Hb_004453_080 Hb_001621_010--Hb_004453_080 Hb_002900_110 Hb_002900_110 Hb_000139_340--Hb_002900_110 Hb_180378_010 Hb_180378_010 Hb_000139_340--Hb_180378_010 Hb_094970_010 Hb_094970_010 Hb_000139_340--Hb_094970_010 Hb_005015_110 Hb_005015_110 Hb_000139_340--Hb_005015_110 Hb_001571_060 Hb_001571_060 Hb_000139_340--Hb_001571_060 Hb_005218_080 Hb_005218_080 Hb_000139_340--Hb_005218_080 Hb_006501_160 Hb_006501_160 Hb_073171_100--Hb_006501_160 Hb_000347_450 Hb_000347_450 Hb_073171_100--Hb_000347_450 Hb_011224_160 Hb_011224_160 Hb_073171_100--Hb_011224_160 Hb_001731_030 Hb_001731_030 Hb_073171_100--Hb_001731_030 Hb_001019_050 Hb_001019_050 Hb_073171_100--Hb_001019_050 Hb_016347_010 Hb_016347_010 Hb_073171_100--Hb_016347_010 Hb_027380_200--Hb_012317_020 Hb_001726_110 Hb_001726_110 Hb_027380_200--Hb_001726_110 Hb_003038_140 Hb_003038_140 Hb_027380_200--Hb_003038_140 Hb_000318_200 Hb_000318_200 Hb_027380_200--Hb_000318_200 Hb_027380_200--Hb_006501_160 Hb_008790_020 Hb_008790_020 Hb_027380_200--Hb_008790_020 Hb_000828_050 Hb_000828_050 Hb_000172_190--Hb_000828_050 Hb_010815_020 Hb_010815_020 Hb_000172_190--Hb_010815_020 Hb_000031_260 Hb_000031_260 Hb_000172_190--Hb_000031_260 Hb_003947_040 Hb_003947_040 Hb_000172_190--Hb_003947_040 Hb_000345_250 Hb_000345_250 Hb_000172_190--Hb_000345_250 Hb_004897_010 Hb_004897_010 Hb_000172_190--Hb_004897_010 Hb_000699_230 Hb_000699_230 Hb_012317_020--Hb_000699_230 Hb_000983_080 Hb_000983_080 Hb_012317_020--Hb_000983_080 Hb_012317_020--Hb_001726_110 Hb_000061_120 Hb_000061_120 Hb_012317_020--Hb_000061_120 Hb_000625_090 Hb_000625_090 Hb_012317_020--Hb_000625_090 Hb_012317_020--Hb_003038_140 Hb_007850_080 Hb_007850_080 Hb_004453_080--Hb_007850_080 Hb_001433_110 Hb_001433_110 Hb_004453_080--Hb_001433_110 Hb_000252_110 Hb_000252_110 Hb_004453_080--Hb_000252_110 Hb_028487_170 Hb_028487_170 Hb_004453_080--Hb_028487_170 Hb_003442_070 Hb_003442_070 Hb_004453_080--Hb_003442_070 Hb_008226_080 Hb_008226_080 Hb_004453_080--Hb_008226_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.315623 1.37223 0.461824 1.31592 0.114934 0.0166044
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.87388 0.99786 0.72144 2.55016 1.89341

CAGE analysis