Hb_001621_020

Information

Type -
Description -
Location Contig1621: 55494-57079
Sequence    

Annotation

kegg
ID brp:103872466
description proline-rich receptor-like protein kinase PERK15
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0000166
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001621_020 0.0 - - -
2 Hb_001355_110 0.090573381 - - PREDICTED: mitochondrial chaperone BCS1-like isoform X1 [Jatropha curcas]
3 Hb_006949_030 0.0982287872 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
4 Hb_001102_270 0.1090337718 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
5 Hb_004079_110 0.1186010093 - - PREDICTED: uncharacterized protein LOC100257802 [Vitis vinifera]
6 Hb_162286_030 0.1186698206 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
7 Hb_001266_020 0.12422983 - - PREDICTED: uncharacterized protein LOC105650395 [Jatropha curcas]
8 Hb_000359_280 0.1273986016 - - hypothetical protein OsI_15300 [Oryza sativa Indica Group]
9 Hb_002686_390 0.1297614426 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
10 Hb_001331_040 0.1321649881 - - PREDICTED: cationic peroxidase 1-like [Jatropha curcas]
11 Hb_002805_150 0.1343709942 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
12 Hb_004447_020 0.1345512667 - - carbohydrate binding protein, putative [Ricinus communis]
13 Hb_001723_070 0.1346544391 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
14 Hb_000692_180 0.1347256598 - - PREDICTED: uncharacterized protein At1g76070 [Jatropha curcas]
15 Hb_012753_200 0.1367579513 - - hypothetical protein JCGZ_20651 [Jatropha curcas]
16 Hb_001663_100 0.1380198452 - - -
17 Hb_000009_130 0.1435467428 - - hypothetical protein POPTR_0007s12410g [Populus trichocarpa]
18 Hb_000381_030 0.1446792749 - - PREDICTED: aquaporin SIP1-1-like [Jatropha curcas]
19 Hb_003807_020 0.1453489263 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
20 Hb_008215_010 0.1460286938 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001621_020 Hb_001621_020 Hb_001355_110 Hb_001355_110 Hb_001621_020--Hb_001355_110 Hb_006949_030 Hb_006949_030 Hb_001621_020--Hb_006949_030 Hb_001102_270 Hb_001102_270 Hb_001621_020--Hb_001102_270 Hb_004079_110 Hb_004079_110 Hb_001621_020--Hb_004079_110 Hb_162286_030 Hb_162286_030 Hb_001621_020--Hb_162286_030 Hb_001266_020 Hb_001266_020 Hb_001621_020--Hb_001266_020 Hb_001355_110--Hb_001266_020 Hb_001623_470 Hb_001623_470 Hb_001355_110--Hb_001623_470 Hb_001355_110--Hb_001102_270 Hb_012753_200 Hb_012753_200 Hb_001355_110--Hb_012753_200 Hb_000489_020 Hb_000489_020 Hb_001355_110--Hb_000489_020 Hb_001331_040 Hb_001331_040 Hb_006949_030--Hb_001331_040 Hb_000381_030 Hb_000381_030 Hb_006949_030--Hb_000381_030 Hb_006938_010 Hb_006938_010 Hb_006949_030--Hb_006938_010 Hb_000010_200 Hb_000010_200 Hb_006949_030--Hb_000010_200 Hb_002686_390 Hb_002686_390 Hb_006949_030--Hb_002686_390 Hb_000359_280 Hb_000359_280 Hb_001102_270--Hb_000359_280 Hb_008783_020 Hb_008783_020 Hb_001102_270--Hb_008783_020 Hb_187991_010 Hb_187991_010 Hb_001102_270--Hb_187991_010 Hb_063523_010 Hb_063523_010 Hb_001102_270--Hb_063523_010 Hb_007765_140 Hb_007765_140 Hb_001102_270--Hb_007765_140 Hb_009778_050 Hb_009778_050 Hb_004079_110--Hb_009778_050 Hb_004079_110--Hb_006949_030 Hb_001660_040 Hb_001660_040 Hb_004079_110--Hb_001660_040 Hb_001723_070 Hb_001723_070 Hb_004079_110--Hb_001723_070 Hb_001609_080 Hb_001609_080 Hb_004079_110--Hb_001609_080 Hb_162286_030--Hb_001723_070 Hb_002110_060 Hb_002110_060 Hb_162286_030--Hb_002110_060 Hb_000009_130 Hb_000009_130 Hb_162286_030--Hb_000009_130 Hb_010174_170 Hb_010174_170 Hb_162286_030--Hb_010174_170 Hb_008215_010 Hb_008215_010 Hb_162286_030--Hb_008215_010 Hb_001266_020--Hb_001623_470 Hb_001266_020--Hb_012753_200 Hb_002805_150 Hb_002805_150 Hb_001266_020--Hb_002805_150 Hb_001266_020--Hb_006949_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 31.6649 15.1791 7.26009 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 49.151 3.32038

CAGE analysis