Hb_001621_070

Information

Type -
Description -
Location Contig1621: 131240-132256
Sequence    

Annotation

kegg
ID pop:POPTR_0008s05890g
description POPTRDRAFT_420760; hypothetical protein
nr
ID XP_002312113.2
description hypothetical protein POPTR_0008s05890g [Populus trichocarpa]
swissprot
ID Q9M2S3
description AT-hook motif nuclear-localized protein 15 OS=Arabidopsis thaliana GN=AHL15 PE=2 SV=1
trembl
ID B9HMK7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s05890g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14622: 130802-130919
cDNA
(Sanger)
(ID:Location)		 004_E17.ab1: 131143-131901 , 043_M16.ab1: 131143-131775

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001621_070 0.0 - - hypothetical protein POPTR_0008s05890g [Populus trichocarpa]
2 Hb_031862_040 0.1697658312 - - purine transporter, putative [Ricinus communis]
3 Hb_004032_420 0.1726440231 - - PREDICTED: AT-hook motif nuclear-localized protein 25-like [Jatropha curcas]
4 Hb_005048_020 0.202376927 - - Retrotransposon protein, putative [Theobroma cacao]
5 Hb_003609_020 0.2101785039 desease resistance Gene Name: Clusterin hypothetical protein CISIN_1g001897mg [Citrus sinensis]
6 Hb_001004_110 0.2188626956 - - conserved hypothetical protein [Ricinus communis]
7 Hb_008066_070 0.2261973758 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
8 Hb_005433_060 0.2304277507 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1C [Jatropha curcas]
9 Hb_002026_060 0.2329414188 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
10 Hb_000260_290 0.2332918384 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
11 Hb_116349_040 0.2367053254 transcription factor TF Family: Orphans PREDICTED: two-component response regulator ARR5 [Jatropha curcas]
12 Hb_010079_030 0.2404286381 - - -
13 Hb_001117_070 0.2446831328 - - 30S ribosomal protein S19, putative [Ricinus communis]
14 Hb_004705_140 0.2447983797 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105647306 [Jatropha curcas]
15 Hb_000042_250 0.2462270963 - - PREDICTED: uncharacterized protein LOC105632812 isoform X1 [Jatropha curcas]
16 Hb_000432_040 0.2463993003 - - PREDICTED: remorin-like [Jatropha curcas]
17 Hb_001433_180 0.2468541873 - - hypothetical protein JCGZ_23261 [Jatropha curcas]
18 Hb_001114_070 0.2469980913 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g58400 [Jatropha curcas]
19 Hb_024468_020 0.2501128344 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
20 Hb_000049_090 0.2509497895 - - PREDICTED: uncharacterized protein LOC105644472 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001621_070 Hb_001621_070 Hb_031862_040 Hb_031862_040 Hb_001621_070--Hb_031862_040 Hb_004032_420 Hb_004032_420 Hb_001621_070--Hb_004032_420 Hb_005048_020 Hb_005048_020 Hb_001621_070--Hb_005048_020 Hb_003609_020 Hb_003609_020 Hb_001621_070--Hb_003609_020 Hb_001004_110 Hb_001004_110 Hb_001621_070--Hb_001004_110 Hb_008066_070 Hb_008066_070 Hb_001621_070--Hb_008066_070 Hb_001114_070 Hb_001114_070 Hb_031862_040--Hb_001114_070 Hb_031862_040--Hb_008066_070 Hb_001049_020 Hb_001049_020 Hb_031862_040--Hb_001049_020 Hb_005433_060 Hb_005433_060 Hb_031862_040--Hb_005433_060 Hb_001433_180 Hb_001433_180 Hb_031862_040--Hb_001433_180 Hb_000567_080 Hb_000567_080 Hb_004032_420--Hb_000567_080 Hb_004032_420--Hb_005048_020 Hb_004032_420--Hb_031862_040 Hb_000638_210 Hb_000638_210 Hb_004032_420--Hb_000638_210 Hb_000215_410 Hb_000215_410 Hb_004032_420--Hb_000215_410 Hb_002918_180 Hb_002918_180 Hb_005048_020--Hb_002918_180 Hb_001473_040 Hb_001473_040 Hb_005048_020--Hb_001473_040 Hb_000538_030 Hb_000538_030 Hb_005048_020--Hb_000538_030 Hb_000258_380 Hb_000258_380 Hb_005048_020--Hb_000258_380 Hb_004200_020 Hb_004200_020 Hb_005048_020--Hb_004200_020 Hb_004705_140 Hb_004705_140 Hb_003609_020--Hb_004705_140 Hb_000045_150 Hb_000045_150 Hb_003609_020--Hb_000045_150 Hb_003994_060 Hb_003994_060 Hb_003609_020--Hb_003994_060 Hb_073562_010 Hb_073562_010 Hb_003609_020--Hb_073562_010 Hb_024468_020 Hb_024468_020 Hb_003609_020--Hb_024468_020 Hb_001969_090 Hb_001969_090 Hb_003609_020--Hb_001969_090 Hb_004328_040 Hb_004328_040 Hb_001004_110--Hb_004328_040 Hb_010029_020 Hb_010029_020 Hb_001004_110--Hb_010029_020 Hb_010407_170 Hb_010407_170 Hb_001004_110--Hb_010407_170 Hb_001004_110--Hb_004705_140 Hb_000676_190 Hb_000676_190 Hb_001004_110--Hb_000676_190 Hb_134469_010 Hb_134469_010 Hb_001004_110--Hb_134469_010 Hb_020805_170 Hb_020805_170 Hb_008066_070--Hb_020805_170 Hb_011512_130 Hb_011512_130 Hb_008066_070--Hb_011512_130 Hb_000140_410 Hb_000140_410 Hb_008066_070--Hb_000140_410 Hb_000905_170 Hb_000905_170 Hb_008066_070--Hb_000905_170 Hb_007676_020 Hb_007676_020 Hb_008066_070--Hb_007676_020 Hb_000856_180 Hb_000856_180 Hb_008066_070--Hb_000856_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.86874 17.9669 2.75215 0.466345 1.56638 0.762584
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.07678 4.6837 10.4285 13.1166 2.07852

CAGE analysis