Hb_001621_080

Information

Type transcription factor
Description TF Family: LOB
Location Contig1621: 141395-142160
Sequence    

Annotation

kegg
ID rcu:RCOM_1480320
description LOB domain-containing protein, putative
nr
ID XP_012091407.1
description PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
swissprot
ID Q9LHS8
description LOB domain-containing protein 33 OS=Arabidopsis thaliana GN=LBD33 PE=2 SV=1
trembl
ID A0A067LJS2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01420 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14623: 131043-148024
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001621_080 0.0 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
2 Hb_013405_120 0.0003534245 - - -
3 Hb_001740_010 0.000503617 - - hypothetical protein JCGZ_18625 [Jatropha curcas]
4 Hb_003894_130 0.000754941 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
5 Hb_002400_120 0.001381396 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
6 Hb_001611_030 0.0016806384 - - -
7 Hb_001568_100 0.0016937897 - - hypothetical protein Csa_2G404850 [Cucumis sativus]
8 Hb_027556_030 0.0022163315 - - PREDICTED: pleiotropic drug resistance protein 1-like, partial [Gossypium raimondii]
9 Hb_006124_020 0.0029777674 - - hypothetical protein JCGZ_13738 [Jatropha curcas]
10 Hb_051719_020 0.0031829198 - - PREDICTED: toll/interleukin-1 receptor-like protein [Jatropha curcas]
11 Hb_002985_020 0.0034637267 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
12 Hb_000036_020 0.0034934309 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_140406_010 0.0040793222 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
14 Hb_007313_020 0.0041056089 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
15 Hb_012120_010 0.0043039957 - - -
16 Hb_004332_060 0.0043398452 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_001476_010 0.004794517 - - hypothetical protein JCGZ_15669 [Jatropha curcas]
18 Hb_000391_030 0.0048635089 - - polyprotein [Citrus endogenous pararetrovirus]
19 Hb_000050_230 0.0048968085 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_002285_010 0.0049069616 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_001621_080 Hb_001621_080 Hb_013405_120 Hb_013405_120 Hb_001621_080--Hb_013405_120 Hb_001740_010 Hb_001740_010 Hb_001621_080--Hb_001740_010 Hb_003894_130 Hb_003894_130 Hb_001621_080--Hb_003894_130 Hb_002400_120 Hb_002400_120 Hb_001621_080--Hb_002400_120 Hb_001611_030 Hb_001611_030 Hb_001621_080--Hb_001611_030 Hb_001568_100 Hb_001568_100 Hb_001621_080--Hb_001568_100 Hb_013405_120--Hb_003894_130 Hb_013405_120--Hb_001740_010 Hb_013405_120--Hb_002400_120 Hb_013405_120--Hb_001611_030 Hb_027556_030 Hb_027556_030 Hb_013405_120--Hb_027556_030 Hb_001740_010--Hb_001568_100 Hb_001740_010--Hb_003894_130 Hb_001740_010--Hb_002400_120 Hb_001740_010--Hb_001611_030 Hb_003894_130--Hb_002400_120 Hb_003894_130--Hb_001611_030 Hb_003894_130--Hb_027556_030 Hb_002400_120--Hb_001611_030 Hb_002400_120--Hb_027556_030 Hb_051719_020 Hb_051719_020 Hb_002400_120--Hb_051719_020 Hb_001611_030--Hb_027556_030 Hb_001611_030--Hb_051719_020 Hb_006124_020 Hb_006124_020 Hb_001568_100--Hb_006124_020 Hb_002985_020 Hb_002985_020 Hb_001568_100--Hb_002985_020 Hb_000036_020 Hb_000036_020 Hb_001568_100--Hb_000036_020 Hb_001568_100--Hb_013405_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0968514 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0851334 0

CAGE analysis