Hb_001621_090

Information

Type -
Description -
Location Contig1621: 145885-148295
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20810g
description POPTRDRAFT_227384; hypothetical protein
nr
ID XP_002315210.2
description hypothetical protein POPTR_0010s20810g [Populus trichocarpa]
swissprot
ID Q7X999
description Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1
trembl
ID A9PGU7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s20810g PE=2 SV=1
Gene Ontology
ID GO:0005524
description ribulose bisphosphate carboxylase oxygenase chloroplastic isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14624: 145832-148296 , PASA_asmbl_14625: 145831-148364
cDNA
(Sanger)
(ID:Location)		 019_D22.ab1: 145834-147453 , 028_I18.ab1: 145834-147464

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001621_090 0.0 - - hypothetical protein POPTR_0010s20810g [Populus trichocarpa]
2 Hb_006665_020 0.046050364 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
3 Hb_005000_120 0.048746865 transcription factor TF Family: C2C2-GATA hypothetical protein RCOM_1046780 [Ricinus communis]
4 Hb_000450_050 0.0490558861 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
5 Hb_005605_020 0.0570919542 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
6 Hb_001046_060 0.0588243279 - - PREDICTED: UDP-glucose flavonoid 3-O-glucosyltransferase 7-like [Fragaria vesca subsp. vesca]
7 Hb_025325_010 0.0599399457 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
8 Hb_107748_010 0.0611588941 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
9 Hb_005276_080 0.0642967586 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
10 Hb_000640_090 0.06639908 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
11 Hb_000589_340 0.0665654738 - - unknown [Populus trichocarpa x Populus deltoides]
12 Hb_001006_160 0.0700142053 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
13 Hb_011068_010 0.0724881088 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
14 Hb_002785_040 0.074089573 - - sedoheptulose-1,7-bisphosphatase, chloroplast, putative [Ricinus communis]
15 Hb_005605_010 0.078259989 - - hypothetical protein POPTR_0019s13220g [Populus trichocarpa]
16 Hb_008748_050 0.0783782388 - - PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Populus euphratica]
17 Hb_003337_080 0.0794595402 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
18 Hb_001287_070 0.0808321181 - - latex plastidic aldolase-like protein [Hevea brasiliensis]
19 Hb_000805_080 0.0811852014 - - PREDICTED: abscisic acid 8'-hydroxylase 2 isoform X2 [Jatropha curcas]
20 Hb_003747_090 0.0813705335 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001621_090 Hb_001621_090 Hb_006665_020 Hb_006665_020 Hb_001621_090--Hb_006665_020 Hb_005000_120 Hb_005000_120 Hb_001621_090--Hb_005000_120 Hb_000450_050 Hb_000450_050 Hb_001621_090--Hb_000450_050 Hb_005605_020 Hb_005605_020 Hb_001621_090--Hb_005605_020 Hb_001046_060 Hb_001046_060 Hb_001621_090--Hb_001046_060 Hb_025325_010 Hb_025325_010 Hb_001621_090--Hb_025325_010 Hb_005276_080 Hb_005276_080 Hb_006665_020--Hb_005276_080 Hb_001006_160 Hb_001006_160 Hb_006665_020--Hb_001006_160 Hb_005605_010 Hb_005605_010 Hb_006665_020--Hb_005605_010 Hb_006665_020--Hb_000450_050 Hb_004837_230 Hb_004837_230 Hb_006665_020--Hb_004837_230 Hb_005000_120--Hb_001046_060 Hb_001287_070 Hb_001287_070 Hb_005000_120--Hb_001287_070 Hb_011068_010 Hb_011068_010 Hb_005000_120--Hb_011068_010 Hb_000039_210 Hb_000039_210 Hb_005000_120--Hb_000039_210 Hb_000111_460 Hb_000111_460 Hb_005000_120--Hb_000111_460 Hb_000589_340 Hb_000589_340 Hb_000450_050--Hb_000589_340 Hb_000450_050--Hb_005000_120 Hb_000450_050--Hb_005276_080 Hb_008748_050 Hb_008748_050 Hb_000450_050--Hb_008748_050 Hb_005605_020--Hb_011068_010 Hb_005605_020--Hb_001046_060 Hb_003337_080 Hb_003337_080 Hb_005605_020--Hb_003337_080 Hb_000640_090 Hb_000640_090 Hb_005605_020--Hb_000640_090 Hb_107748_010 Hb_107748_010 Hb_005605_020--Hb_107748_010 Hb_000805_080 Hb_000805_080 Hb_005605_020--Hb_000805_080 Hb_001046_060--Hb_000805_080 Hb_001046_060--Hb_011068_010 Hb_001046_060--Hb_001287_070 Hb_001046_060--Hb_107748_010 Hb_001046_060--Hb_003337_080 Hb_160045_010 Hb_160045_010 Hb_025325_010--Hb_160045_010 Hb_025325_010--Hb_005000_120 Hb_025325_010--Hb_006665_020 Hb_006901_020 Hb_006901_020 Hb_025325_010--Hb_006901_020 Hb_001338_130 Hb_001338_130 Hb_025325_010--Hb_001338_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0773384 123.272 2554.63 453.406 0.0141227 0.210918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.40873 0.859061 0 0.161421 4887.83

CAGE analysis