Hb_001621_100

Information

Type -
Description -
Location Contig1621: 151441-153510
Sequence    

Annotation

kegg
ID rcu:RCOM_1480100
description kinase, putative (EC:2.7.11.22)
nr
ID XP_012088795.1
description PREDICTED: L-type lectin-domain containing receptor kinase S.4 [Jatropha curcas]
swissprot
ID Q9M2S4
description L-type lectin-domain containing receptor kinase S.4 OS=Arabidopsis thaliana GN=LECRKS4 PE=2 SV=1
trembl
ID A0A067LCF1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01423 PE=3 SV=1
Gene Ontology
ID GO:0004693
description l-type lectin-domain containing receptor kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14627: 151369-151584
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001621_100 0.0 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4 [Jatropha curcas]
2 Hb_002200_070 0.1255784132 - - PREDICTED: endoglucanase 9-like [Populus euphratica]
3 Hb_000768_150 0.1396069886 - - PREDICTED: glycine-rich protein A3-like [Fragaria vesca subsp. vesca]
4 Hb_001546_010 0.1438928774 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003470_110 0.1468397285 - - unnamed protein product [Vitis vinifera]
6 Hb_000580_110 0.1553223163 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
7 Hb_002759_070 0.1555069153 - - PREDICTED: nucleobase-ascorbate transporter 7 [Jatropha curcas]
8 Hb_187959_010 0.1558745389 - - hypothetical protein JCGZ_12266 [Jatropha curcas]
9 Hb_004032_110 0.1560897708 - - PREDICTED: putative methylesterase 14, chloroplastic [Jatropha curcas]
10 Hb_000077_310 0.1562296881 - - PREDICTED: clathrin light chain 1 [Jatropha curcas]
11 Hb_007590_100 0.1592759105 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
12 Hb_161396_010 0.1620629687 - - hypothetical protein F383_26394 [Gossypium arboreum]
13 Hb_031089_020 0.1665852093 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
14 Hb_000997_320 0.1668115833 - - PREDICTED: acylamino-acid-releasing enzyme-like [Malus domestica]
15 Hb_036388_010 0.1672157712 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
16 Hb_057556_010 0.1673210825 - - Light-regulated protein precursor, putative [Ricinus communis]
17 Hb_000808_150 0.1687977298 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
18 Hb_003462_080 0.1690572879 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
19 Hb_020378_020 0.1692475623 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
20 Hb_006736_050 0.1695982201 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]

Gene co-expression network

sample Hb_001621_100 Hb_001621_100 Hb_002200_070 Hb_002200_070 Hb_001621_100--Hb_002200_070 Hb_000768_150 Hb_000768_150 Hb_001621_100--Hb_000768_150 Hb_001546_010 Hb_001546_010 Hb_001621_100--Hb_001546_010 Hb_003470_110 Hb_003470_110 Hb_001621_100--Hb_003470_110 Hb_000580_110 Hb_000580_110 Hb_001621_100--Hb_000580_110 Hb_002759_070 Hb_002759_070 Hb_001621_100--Hb_002759_070 Hb_000861_100 Hb_000861_100 Hb_002200_070--Hb_000861_100 Hb_031089_020 Hb_031089_020 Hb_002200_070--Hb_031089_020 Hb_003371_070 Hb_003371_070 Hb_002200_070--Hb_003371_070 Hb_000057_130 Hb_000057_130 Hb_002200_070--Hb_000057_130 Hb_002200_070--Hb_003470_110 Hb_036388_010 Hb_036388_010 Hb_000768_150--Hb_036388_010 Hb_030312_030 Hb_030312_030 Hb_000768_150--Hb_030312_030 Hb_012053_020 Hb_012053_020 Hb_000768_150--Hb_012053_020 Hb_009803_020 Hb_009803_020 Hb_000768_150--Hb_009803_020 Hb_004326_010 Hb_004326_010 Hb_000768_150--Hb_004326_010 Hb_000997_320 Hb_000997_320 Hb_000768_150--Hb_000997_320 Hb_000836_060 Hb_000836_060 Hb_001546_010--Hb_000836_060 Hb_012707_040 Hb_012707_040 Hb_001546_010--Hb_012707_040 Hb_001546_010--Hb_000768_150 Hb_000601_040 Hb_000601_040 Hb_001546_010--Hb_000601_040 Hb_001546_010--Hb_009803_020 Hb_003470_110--Hb_031089_020 Hb_000236_180 Hb_000236_180 Hb_003470_110--Hb_000236_180 Hb_098795_030 Hb_098795_030 Hb_003470_110--Hb_098795_030 Hb_006615_230 Hb_006615_230 Hb_003470_110--Hb_006615_230 Hb_084147_010 Hb_084147_010 Hb_003470_110--Hb_084147_010 Hb_030565_100 Hb_030565_100 Hb_003470_110--Hb_030565_100 Hb_000580_110--Hb_000236_180 Hb_000417_380 Hb_000417_380 Hb_000580_110--Hb_000417_380 Hb_002495_030 Hb_002495_030 Hb_000580_110--Hb_002495_030 Hb_000077_310 Hb_000077_310 Hb_000580_110--Hb_000077_310 Hb_001195_380 Hb_001195_380 Hb_000580_110--Hb_001195_380 Hb_001493_060 Hb_001493_060 Hb_000580_110--Hb_001493_060 Hb_002486_020 Hb_002486_020 Hb_002759_070--Hb_002486_020 Hb_000120_940 Hb_000120_940 Hb_002759_070--Hb_000120_940 Hb_000920_160 Hb_000920_160 Hb_002759_070--Hb_000920_160 Hb_161396_010 Hb_161396_010 Hb_002759_070--Hb_161396_010 Hb_000438_120 Hb_000438_120 Hb_002759_070--Hb_000438_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0856623 0.625337 1.07537 3.63414 0.00895063 0.0876295
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.543122 0.615383 0.0973351 1.37331 2.96526

CAGE analysis