Hb_001621_180

Information

Type -
Description -
Location Contig1621: 243078-247415
Sequence    

Annotation

kegg
ID rcu:RCOM_0040600
description fk506 binding protein, putative (EC:5.2.1.8)
nr
ID XP_012088909.1
description PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
swissprot
ID Q9M2S7
description Peptidyl-prolyl cis-trans isomerase FKBP20-1 OS=Arabidopsis thaliana GN=FKBP20-1 PE=1 SV=1
trembl
ID A0A067L939
description Peptidyl-prolyl cis-trans isomerase OS=Jatropha curcas GN=JCGZ_01432 PE=4 SV=1
Gene Ontology
ID GO:0003755
description peptidyl-prolyl cis-trans isomerase fkbp20-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14644: 243340-247493 , PASA_asmbl_14645: 243233-247493
cDNA
(Sanger)
(ID:Location)		 019_C23.ab1: 243468-247479 , 045_C13.ab1: 243539-247493 , 051_A24.ab1: 243539-247493

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001621_180 0.0 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-1 [Jatropha curcas]
2 Hb_001252_140 0.0724725337 - - catalytic, putative [Ricinus communis]
3 Hb_007441_180 0.090273382 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000563_590 0.0904366232 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
5 Hb_009252_130 0.0934399236 - - Deletion of SUV3 suppressor 1(I) isoform 1 [Theobroma cacao]
6 Hb_005615_070 0.0960089915 - - Rab7 [Hevea brasiliensis]
7 Hb_001104_120 0.096558791 - - -
8 Hb_000061_160 0.0989508579 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
9 Hb_000032_260 0.0990288785 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]
10 Hb_034585_040 0.1011309907 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
11 Hb_000599_090 0.1043841832 - - hypothetical protein POPTR_0002s039001g, partial [Populus trichocarpa]
12 Hb_000143_050 0.1062600066 - - PREDICTED: MFP1 attachment factor 1-like [Jatropha curcas]
13 Hb_183963_020 0.1077518217 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
14 Hb_000111_280 0.1116982313 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
15 Hb_005276_100 0.1126503736 - - PREDICTED: uncharacterized protein LOC105640215 [Jatropha curcas]
16 Hb_004410_010 0.1184610932 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
17 Hb_007747_130 0.1200953689 - - PREDICTED: uncharacterized protein LOC105635879 [Jatropha curcas]
18 Hb_000777_060 0.1245584959 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006469_060 0.1247185438 - - hypothetical protein POPTR_0005s16470g [Populus trichocarpa]
20 Hb_001198_030 0.12599454 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]

Gene co-expression network

sample Hb_001621_180 Hb_001621_180 Hb_001252_140 Hb_001252_140 Hb_001621_180--Hb_001252_140 Hb_007441_180 Hb_007441_180 Hb_001621_180--Hb_007441_180 Hb_000563_590 Hb_000563_590 Hb_001621_180--Hb_000563_590 Hb_009252_130 Hb_009252_130 Hb_001621_180--Hb_009252_130 Hb_005615_070 Hb_005615_070 Hb_001621_180--Hb_005615_070 Hb_001104_120 Hb_001104_120 Hb_001621_180--Hb_001104_120 Hb_004410_010 Hb_004410_010 Hb_001252_140--Hb_004410_010 Hb_007747_130 Hb_007747_130 Hb_001252_140--Hb_007747_130 Hb_006469_060 Hb_006469_060 Hb_001252_140--Hb_006469_060 Hb_001252_140--Hb_001104_120 Hb_034585_040 Hb_034585_040 Hb_001252_140--Hb_034585_040 Hb_007441_180--Hb_001104_120 Hb_007441_180--Hb_000563_590 Hb_007441_180--Hb_009252_130 Hb_000190_060 Hb_000190_060 Hb_007441_180--Hb_000190_060 Hb_002234_210 Hb_002234_210 Hb_007441_180--Hb_002234_210 Hb_001454_330 Hb_001454_330 Hb_000563_590--Hb_001454_330 Hb_000563_590--Hb_001104_120 Hb_000089_130 Hb_000089_130 Hb_000563_590--Hb_000089_130 Hb_011139_020 Hb_011139_020 Hb_000563_590--Hb_011139_020 Hb_183963_020 Hb_183963_020 Hb_000563_590--Hb_183963_020 Hb_009252_130--Hb_000190_060 Hb_000815_270 Hb_000815_270 Hb_009252_130--Hb_000815_270 Hb_001616_020 Hb_001616_020 Hb_009252_130--Hb_001616_020 Hb_009252_130--Hb_000563_590 Hb_000061_480 Hb_000061_480 Hb_009252_130--Hb_000061_480 Hb_000143_050 Hb_000143_050 Hb_005615_070--Hb_000143_050 Hb_004297_040 Hb_004297_040 Hb_005615_070--Hb_004297_040 Hb_000032_260 Hb_000032_260 Hb_005615_070--Hb_000032_260 Hb_002291_030 Hb_002291_030 Hb_005615_070--Hb_002291_030 Hb_000085_300 Hb_000085_300 Hb_005615_070--Hb_000085_300 Hb_000061_160 Hb_000061_160 Hb_001104_120--Hb_000061_160 Hb_001804_040 Hb_001804_040 Hb_001104_120--Hb_001804_040 Hb_001104_120--Hb_001454_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
298.593 13.3578 21.5354 25.9253 268.139 290.588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
492.019 803.018 320.145 49.0933 19.6807

CAGE analysis