Hb_001623_020

Information

Type -
Description -
Location Contig1623: 8955-10553
Sequence    

Annotation

kegg
ID rcu:RCOM_1021470
description 9-cis-epoxycarotenoid dioxygenase, putative
nr
ID XP_002518139.1
description 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
swissprot
ID Q9LRM7
description 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1
trembl
ID B9RWM0
description 9-cis-epoxycarotenoid dioxygenase, putative OS=Ricinus communis GN=RCOM_1021470 PE=4 SV=1
Gene Ontology
ID GO:0009535
description 9-cis-epoxycarotenoid dioxygenase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_020 0.0 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
2 Hb_000256_050 0.0483802004 - - chitinase, putative [Ricinus communis]
3 Hb_104855_020 0.0531968455 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_013726_100 0.0551214837 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
5 Hb_143232_020 0.0551626277 - - hypothetical protein JCGZ_20467 [Jatropha curcas]
6 Hb_009683_060 0.0624927831 - - -
7 Hb_002475_110 0.0765748734 - - E3 ubiquitin ligase PUB14, putative [Ricinus communis]
8 Hb_011111_010 0.077729019 - - PREDICTED: putative RING-H2 finger protein ATL21A [Jatropha curcas]
9 Hb_167802_010 0.0778477129 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
10 Hb_002486_030 0.0802486709 - - PREDICTED: nuclear speckle splicing regulatory protein 1-like [Jatropha curcas]
11 Hb_073423_010 0.0829306767 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_008579_010 0.084152164 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
13 Hb_002572_060 0.0937763135 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000904_090 0.0948043928 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
15 Hb_093204_010 0.0951977503 - - conserved hypothetical protein [Ricinus communis]
16 Hb_142691_010 0.0958458652 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
17 Hb_147137_020 0.0978066902 - - hypothetical protein JCGZ_07227 [Jatropha curcas]
18 Hb_025477_030 0.1062022075 transcription factor TF Family: ERF dehydration-responsive element-binding protein 2 [Manihot esculenta]
19 Hb_000227_410 0.106697836 - - PREDICTED: uncharacterized protein LOC105631970 [Jatropha curcas]
20 Hb_000610_030 0.1071729023 - - hypothetical protein MIMGU_mgv1a0038491mg, partial [Erythranthe guttata]

Gene co-expression network

sample Hb_001623_020 Hb_001623_020 Hb_000256_050 Hb_000256_050 Hb_001623_020--Hb_000256_050 Hb_104855_020 Hb_104855_020 Hb_001623_020--Hb_104855_020 Hb_013726_100 Hb_013726_100 Hb_001623_020--Hb_013726_100 Hb_143232_020 Hb_143232_020 Hb_001623_020--Hb_143232_020 Hb_009683_060 Hb_009683_060 Hb_001623_020--Hb_009683_060 Hb_002475_110 Hb_002475_110 Hb_001623_020--Hb_002475_110 Hb_000256_050--Hb_013726_100 Hb_000256_050--Hb_002475_110 Hb_002572_060 Hb_002572_060 Hb_000256_050--Hb_002572_060 Hb_167802_010 Hb_167802_010 Hb_000256_050--Hb_167802_010 Hb_009393_010 Hb_009393_010 Hb_000256_050--Hb_009393_010 Hb_104855_020--Hb_009683_060 Hb_008579_010 Hb_008579_010 Hb_104855_020--Hb_008579_010 Hb_002486_030 Hb_002486_030 Hb_104855_020--Hb_002486_030 Hb_104855_020--Hb_143232_020 Hb_142691_010 Hb_142691_010 Hb_104855_020--Hb_142691_010 Hb_013726_100--Hb_002475_110 Hb_013726_100--Hb_002572_060 Hb_025477_030 Hb_025477_030 Hb_013726_100--Hb_025477_030 Hb_013726_100--Hb_009683_060 Hb_073423_010 Hb_073423_010 Hb_143232_020--Hb_073423_010 Hb_143232_020--Hb_002486_030 Hb_011111_010 Hb_011111_010 Hb_143232_020--Hb_011111_010 Hb_143232_020--Hb_008579_010 Hb_009683_060--Hb_167802_010 Hb_000904_090 Hb_000904_090 Hb_009683_060--Hb_000904_090 Hb_114932_010 Hb_114932_010 Hb_009683_060--Hb_114932_010 Hb_000338_020 Hb_000338_020 Hb_009683_060--Hb_000338_020 Hb_027214_060 Hb_027214_060 Hb_002475_110--Hb_027214_060 Hb_000227_410 Hb_000227_410 Hb_002475_110--Hb_000227_410 Hb_002475_110--Hb_025477_030 Hb_002475_110--Hb_000904_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 9.85781 0.631238 1.31544 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis