Hb_001623_060

Information

Type -
Description -
Location Contig1623: 33643-38317
Sequence    

Annotation

kegg
ID rcu:RCOM_1021600
description potassium channel beta, putative (EC:1.1.1.91)
nr
ID XP_002518142.1
description potassium channel beta, putative [Ricinus communis]
swissprot
ID O23016
description Probable voltage-gated potassium channel subunit beta OS=Arabidopsis thaliana GN=KAB1 PE=1 SV=1
trembl
ID B9RWM3
description Potassium channel beta, putative OS=Ricinus communis GN=RCOM_1021600 PE=4 SV=1
Gene Ontology
ID GO:0005886
description probable voltage-gated potassium channel subunit beta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14674: 33606-38121
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_060 0.0 - - potassium channel beta, putative [Ricinus communis]
2 Hb_186982_040 0.0908387152 - - hypothetical protein PHAVU_003G089200g [Phaseolus vulgaris]
3 Hb_000015_030 0.0930439731 - - PREDICTED: THO complex subunit 4B-like [Jatropha curcas]
4 Hb_006816_260 0.1003055011 - - hypothetical protein JCGZ_23244 [Jatropha curcas]
5 Hb_000538_120 0.1066390679 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
6 Hb_000136_350 0.1072196172 - - PREDICTED: 40S ribosomal protein S5 [Nomascus leucogenys]
7 Hb_004109_340 0.1083813585 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14-like [Jatropha curcas]
8 Hb_003098_020 0.1085720887 - - 40S ribosomal protein S5B [Hevea brasiliensis]
9 Hb_028396_010 0.1088454558 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
10 Hb_002217_350 0.1105428922 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
11 Hb_002014_020 0.1108701519 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
12 Hb_002205_090 0.1125921073 - - RecName: Full=Superoxide dismutase [Mn], mitochondrial; Flags: Precursor [Hevea brasiliensis]
13 Hb_004429_090 0.1127700172 - - PREDICTED: ras GTPase-activating protein-binding protein 1-like isoform X1 [Jatropha curcas]
14 Hb_007894_170 0.1155005767 - - PREDICTED: UPF0136 membrane protein At2g26240-like [Jatropha curcas]
15 Hb_001123_160 0.1164517104 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
16 Hb_005914_010 0.1167851925 - - PREDICTED: peroxisomal membrane protein PMP22 [Jatropha curcas]
17 Hb_014720_110 0.1181471048 - - PREDICTED: GDSL esterase/lipase At5g62930 [Tarenaya hassleriana]
18 Hb_004767_080 0.1183283866 - - PREDICTED: mitochondrial ATPase complex subunit ATP10 isoform X1 [Jatropha curcas]
19 Hb_000896_040 0.1185202673 - - BnaC02g13240D [Brassica napus]
20 Hb_005305_150 0.1191997243 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]

Gene co-expression network

sample Hb_001623_060 Hb_001623_060 Hb_186982_040 Hb_186982_040 Hb_001623_060--Hb_186982_040 Hb_000015_030 Hb_000015_030 Hb_001623_060--Hb_000015_030 Hb_006816_260 Hb_006816_260 Hb_001623_060--Hb_006816_260 Hb_000538_120 Hb_000538_120 Hb_001623_060--Hb_000538_120 Hb_000136_350 Hb_000136_350 Hb_001623_060--Hb_000136_350 Hb_004109_340 Hb_004109_340 Hb_001623_060--Hb_004109_340 Hb_186982_040--Hb_000136_350 Hb_003098_020 Hb_003098_020 Hb_186982_040--Hb_003098_020 Hb_186982_040--Hb_000538_120 Hb_007928_030 Hb_007928_030 Hb_186982_040--Hb_007928_030 Hb_005307_050 Hb_005307_050 Hb_186982_040--Hb_005307_050 Hb_186982_040--Hb_004109_340 Hb_005914_010 Hb_005914_010 Hb_000015_030--Hb_005914_010 Hb_006698_030 Hb_006698_030 Hb_000015_030--Hb_006698_030 Hb_011671_440 Hb_011671_440 Hb_000015_030--Hb_011671_440 Hb_009687_010 Hb_009687_010 Hb_000015_030--Hb_009687_010 Hb_001332_040 Hb_001332_040 Hb_000015_030--Hb_001332_040 Hb_007894_170 Hb_007894_170 Hb_006816_260--Hb_007894_170 Hb_028396_010 Hb_028396_010 Hb_006816_260--Hb_028396_010 Hb_001437_060 Hb_001437_060 Hb_006816_260--Hb_001437_060 Hb_004044_040 Hb_004044_040 Hb_006816_260--Hb_004044_040 Hb_005054_210 Hb_005054_210 Hb_006816_260--Hb_005054_210 Hb_007894_060 Hb_007894_060 Hb_000538_120--Hb_007894_060 Hb_000136_260 Hb_000136_260 Hb_000538_120--Hb_000136_260 Hb_000302_140 Hb_000302_140 Hb_000538_120--Hb_000302_140 Hb_000538_120--Hb_007928_030 Hb_000571_020 Hb_000571_020 Hb_000538_120--Hb_000571_020 Hb_000413_280 Hb_000413_280 Hb_000538_120--Hb_000413_280 Hb_000136_350--Hb_003098_020 Hb_000136_350--Hb_000136_260 Hb_000136_350--Hb_000538_120 Hb_000377_120 Hb_000377_120 Hb_000136_350--Hb_000377_120 Hb_000419_020 Hb_000419_020 Hb_000136_350--Hb_000419_020 Hb_002042_150 Hb_002042_150 Hb_004109_340--Hb_002042_150 Hb_004109_340--Hb_000136_260 Hb_011628_060 Hb_011628_060 Hb_004109_340--Hb_011628_060 Hb_023001_040 Hb_023001_040 Hb_004109_340--Hb_023001_040 Hb_161574_020 Hb_161574_020 Hb_004109_340--Hb_161574_020 Hb_001189_070 Hb_001189_070 Hb_004109_340--Hb_001189_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5108 4.43156 17.5336 28.2236 10.2785 11.5904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.7301 35.7909 20.0281 31.7376 9.42781

CAGE analysis