Hb_001623_090

Information

Type -
Description -
Location Contig1623: 47696-57534
Sequence    

Annotation

kegg
ID rcu:RCOM_1023410
description hypothetical protein
nr
ID XP_012092671.1
description PREDICTED: probable serine incorporator [Jatropha curcas]
swissprot
ID Q7Y225
description Dirigent protein 16 OS=Arabidopsis thaliana GN=DIR16 PE=2 SV=1
trembl
ID B9RWQ0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1023410 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable serine incorporator

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_090 0.0 - - PREDICTED: probable serine incorporator [Jatropha curcas]
2 Hb_003185_090 0.1844478064 - - Boron transporter, putative [Ricinus communis]
3 Hb_004162_010 0.2121752603 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000926_100 0.2169046845 - - hypothetical protein B456_007G076800 [Gossypium raimondii]
5 Hb_004495_020 0.2183591985 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
6 Hb_002025_350 0.221205738 - - PREDICTED: glutamate decarboxylase 4 [Jatropha curcas]
7 Hb_006788_010 0.2288985376 - - PREDICTED: calcium-transporting ATPase 12, plasma membrane-type [Jatropha curcas]
8 Hb_002027_310 0.2326462265 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001022_050 0.2365405451 - - hypothetical protein POPTR_0016s07780g [Populus trichocarpa]
10 Hb_029584_090 0.2394802016 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
11 Hb_029921_030 0.245078982 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000227_370 0.2451939203 - - sugar transporter, putative [Ricinus communis]
13 Hb_001206_090 0.2491404645 - - pyruvate decarboxylase [Hevea brasiliensis]
14 Hb_042083_060 0.2519279051 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
15 Hb_000421_270 0.2535711297 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]
16 Hb_000302_090 0.2551450168 - - PREDICTED: protein SGT1 homolog [Prunus mume]
17 Hb_015057_050 0.2576768687 - - D-alanine aminotransferase, putative [Ricinus communis]
18 Hb_032631_050 0.2582948114 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
19 Hb_000041_290 0.2592964073 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
20 Hb_003050_050 0.2598538306 - - hypothetical protein JCGZ_04619 [Jatropha curcas]

Gene co-expression network

sample Hb_001623_090 Hb_001623_090 Hb_003185_090 Hb_003185_090 Hb_001623_090--Hb_003185_090 Hb_004162_010 Hb_004162_010 Hb_001623_090--Hb_004162_010 Hb_000926_100 Hb_000926_100 Hb_001623_090--Hb_000926_100 Hb_004495_020 Hb_004495_020 Hb_001623_090--Hb_004495_020 Hb_002025_350 Hb_002025_350 Hb_001623_090--Hb_002025_350 Hb_006788_010 Hb_006788_010 Hb_001623_090--Hb_006788_010 Hb_012754_020 Hb_012754_020 Hb_003185_090--Hb_012754_020 Hb_000227_370 Hb_000227_370 Hb_003185_090--Hb_000227_370 Hb_001022_050 Hb_001022_050 Hb_003185_090--Hb_001022_050 Hb_000914_130 Hb_000914_130 Hb_003185_090--Hb_000914_130 Hb_003185_090--Hb_004162_010 Hb_002027_310 Hb_002027_310 Hb_004162_010--Hb_002027_310 Hb_010921_090 Hb_010921_090 Hb_004162_010--Hb_010921_090 Hb_004657_040 Hb_004657_040 Hb_004162_010--Hb_004657_040 Hb_004286_030 Hb_004286_030 Hb_004162_010--Hb_004286_030 Hb_000450_160 Hb_000450_160 Hb_000926_100--Hb_000450_160 Hb_003972_060 Hb_003972_060 Hb_000926_100--Hb_003972_060 Hb_029921_030 Hb_029921_030 Hb_000926_100--Hb_029921_030 Hb_002998_070 Hb_002998_070 Hb_000926_100--Hb_002998_070 Hb_003680_210 Hb_003680_210 Hb_000926_100--Hb_003680_210 Hb_001341_200 Hb_001341_200 Hb_004495_020--Hb_001341_200 Hb_029584_090 Hb_029584_090 Hb_004495_020--Hb_029584_090 Hb_000139_140 Hb_000139_140 Hb_004495_020--Hb_000139_140 Hb_003607_060 Hb_003607_060 Hb_004495_020--Hb_003607_060 Hb_005181_180 Hb_005181_180 Hb_004495_020--Hb_005181_180 Hb_002026_080 Hb_002026_080 Hb_004495_020--Hb_002026_080 Hb_000421_270 Hb_000421_270 Hb_002025_350--Hb_000421_270 Hb_032631_050 Hb_032631_050 Hb_002025_350--Hb_032631_050 Hb_002025_350--Hb_000227_370 Hb_002025_350--Hb_029584_090 Hb_000005_230 Hb_000005_230 Hb_002025_350--Hb_000005_230 Hb_001405_150 Hb_001405_150 Hb_002025_350--Hb_001405_150 Hb_006788_010--Hb_000005_230 Hb_006618_080 Hb_006618_080 Hb_006788_010--Hb_006618_080 Hb_006788_010--Hb_002025_350 Hb_002597_010 Hb_002597_010 Hb_006788_010--Hb_002597_010 Hb_000347_230 Hb_000347_230 Hb_006788_010--Hb_000347_230 Hb_000815_280 Hb_000815_280 Hb_006788_010--Hb_000815_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.165052 0.23549 0.208703 0.0148683 0.0144248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0180285 0.042559 0.13517 0.631032 0

CAGE analysis