Hb_001623_130

Information

Type -
Description -
Location Contig1623: 67060-73019
Sequence    

Annotation

kegg
ID rcu:RCOM_1023260
description Transmembrane protein TPARL, putative
nr
ID XP_012092666.1
description PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9T0H9
description GDT1-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=At4g13590 PE=1 SV=2
trembl
ID A0A067J9B6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06428 PE=4 SV=1
Gene Ontology
ID GO:0016021
description gdt1-like protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14684: 67204-73057
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_130 0.0 - - PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_000613_120 0.0971816825 transcription factor TF Family: SET PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
3 Hb_000220_210 0.1010486336 - - PREDICTED: sec-independent protein translocase protein TATC, chloroplastic [Jatropha curcas]
4 Hb_003752_070 0.108252035 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
5 Hb_006787_090 0.1087410258 - - PREDICTED: uncharacterized protein LOC105646282 [Jatropha curcas]
6 Hb_002542_160 0.1097656413 - - PREDICTED: peptide chain release factor APG3, chloroplastic [Jatropha curcas]
7 Hb_093458_060 0.1129876034 - - PREDICTED: uncharacterized protein LOC105633194 [Jatropha curcas]
8 Hb_005389_170 0.1131742327 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
9 Hb_000309_020 0.1132067294 - - PREDICTED: uncharacterized protein LOC105641764 [Jatropha curcas]
10 Hb_005539_010 0.114055859 - - PREDICTED: uncharacterized protein LOC105644585 [Jatropha curcas]
11 Hb_000345_370 0.1151596718 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
12 Hb_010174_090 0.1154198417 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
13 Hb_000363_060 0.1177408739 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
14 Hb_001660_120 0.1197230031 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
15 Hb_163950_070 0.120285521 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
16 Hb_001220_050 0.1225554443 - - DNA-damage-inducible protein f, putative [Ricinus communis]
17 Hb_000311_120 0.1229695097 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
18 Hb_021650_010 0.1231453052 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
19 Hb_006198_130 0.1232687716 - - PREDICTED: uncharacterized protein LOC105644406 [Jatropha curcas]
20 Hb_025194_060 0.1236835026 - - PREDICTED: photosynthetic NDH subunit of lumenal location 5, chloroplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001623_130 Hb_001623_130 Hb_000613_120 Hb_000613_120 Hb_001623_130--Hb_000613_120 Hb_000220_210 Hb_000220_210 Hb_001623_130--Hb_000220_210 Hb_003752_070 Hb_003752_070 Hb_001623_130--Hb_003752_070 Hb_006787_090 Hb_006787_090 Hb_001623_130--Hb_006787_090 Hb_002542_160 Hb_002542_160 Hb_001623_130--Hb_002542_160 Hb_093458_060 Hb_093458_060 Hb_001623_130--Hb_093458_060 Hb_010174_090 Hb_010174_090 Hb_000613_120--Hb_010174_090 Hb_000802_130 Hb_000802_130 Hb_000613_120--Hb_000802_130 Hb_001789_160 Hb_001789_160 Hb_000613_120--Hb_001789_160 Hb_000613_120--Hb_006787_090 Hb_004109_260 Hb_004109_260 Hb_000613_120--Hb_004109_260 Hb_031042_060 Hb_031042_060 Hb_000613_120--Hb_031042_060 Hb_000220_210--Hb_002542_160 Hb_000309_020 Hb_000309_020 Hb_000220_210--Hb_000309_020 Hb_000345_370 Hb_000345_370 Hb_000220_210--Hb_000345_370 Hb_001427_040 Hb_001427_040 Hb_000220_210--Hb_001427_040 Hb_001472_160 Hb_001472_160 Hb_000220_210--Hb_001472_160 Hb_004884_180 Hb_004884_180 Hb_000220_210--Hb_004884_180 Hb_021650_010 Hb_021650_010 Hb_003752_070--Hb_021650_010 Hb_001195_270 Hb_001195_270 Hb_003752_070--Hb_001195_270 Hb_003752_070--Hb_006787_090 Hb_005162_110 Hb_005162_110 Hb_003752_070--Hb_005162_110 Hb_000051_060 Hb_000051_060 Hb_003752_070--Hb_000051_060 Hb_003752_070--Hb_010174_090 Hb_000311_120 Hb_000311_120 Hb_006787_090--Hb_000311_120 Hb_006787_090--Hb_010174_090 Hb_000284_130 Hb_000284_130 Hb_006787_090--Hb_000284_130 Hb_000144_060 Hb_000144_060 Hb_006787_090--Hb_000144_060 Hb_002542_160--Hb_000309_020 Hb_002542_160--Hb_000345_370 Hb_000085_070 Hb_000085_070 Hb_002542_160--Hb_000085_070 Hb_016461_030 Hb_016461_030 Hb_002542_160--Hb_016461_030 Hb_000032_500 Hb_000032_500 Hb_002542_160--Hb_000032_500 Hb_093458_060--Hb_000345_370 Hb_007769_040 Hb_007769_040 Hb_093458_060--Hb_007769_040 Hb_003777_020 Hb_003777_020 Hb_093458_060--Hb_003777_020 Hb_000028_110 Hb_000028_110 Hb_093458_060--Hb_000028_110 Hb_002282_070 Hb_002282_070 Hb_093458_060--Hb_002282_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.9882 3.96726 18.4215 7.89849 12.6476 5.95941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.41159 7.90145 4.67957 4.73783 25.4638

CAGE analysis