Hb_001623_140

Information

Type transcription factor
Description TF Family: C2C2-GATA
Location Contig1623: 74373-76672
Sequence    

Annotation

kegg
ID rcu:RCOM_1023150
description GATA transcription factor, putative
nr
ID XP_012092669.1
description PREDICTED: GATA transcription factor 1 [Jatropha curcas]
swissprot
ID Q8LAU9
description GATA transcription factor 1 OS=Arabidopsis thaliana GN=GATA1 PE=2 SV=2
trembl
ID A0A067JC77
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06429 PE=4 SV=1
Gene Ontology
ID GO:0003700
description gata transcription factor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14686: 75444-76708 , PASA_asmbl_14687: 74718-76708 , PASA_asmbl_14688: 74797-75076
cDNA
(Sanger)
(ID:Location)		 014_I07.ab1: 75448-75879 , 019_N08.ab1: 75444-75900 , 020_M15.ab1: 75447-76107

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_140 0.0 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 1 [Jatropha curcas]
2 Hb_001168_040 0.0545156718 - - -
3 Hb_001610_110 0.0703720446 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
4 Hb_001288_080 0.0887355761 - - PREDICTED: probable protein phosphatase 2C 50 [Populus euphratica]
5 Hb_001720_010 0.089536057 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
6 Hb_023827_040 0.0904175197 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
7 Hb_004324_340 0.091487447 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001252_010 0.0935892277 - - hypothetical protein JCGZ_01389 [Jatropha curcas]
9 Hb_000567_210 0.0941302955 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
10 Hb_000224_060 0.0945364091 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
11 Hb_054865_090 0.0977852646 - - GRF1-INTERACTING FACTOR 2 family protein [Populus trichocarpa]
12 Hb_000421_120 0.1007621476 - - PREDICTED: NEDD8-specific protease 1 [Jatropha curcas]
13 Hb_052764_050 0.1010041414 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
14 Hb_086639_070 0.1010530589 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
15 Hb_045793_010 0.1018567408 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]
16 Hb_134951_010 0.1018968371 - - PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
17 Hb_033095_020 0.1022139384 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000394_190 0.1028505685 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
19 Hb_001014_050 0.1041786159 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105647306 [Jatropha curcas]
20 Hb_001486_080 0.1068416812 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]

Gene co-expression network

sample Hb_001623_140 Hb_001623_140 Hb_001168_040 Hb_001168_040 Hb_001623_140--Hb_001168_040 Hb_001610_110 Hb_001610_110 Hb_001623_140--Hb_001610_110 Hb_001288_080 Hb_001288_080 Hb_001623_140--Hb_001288_080 Hb_001720_010 Hb_001720_010 Hb_001623_140--Hb_001720_010 Hb_023827_040 Hb_023827_040 Hb_001623_140--Hb_023827_040 Hb_004324_340 Hb_004324_340 Hb_001623_140--Hb_004324_340 Hb_033095_020 Hb_033095_020 Hb_001168_040--Hb_033095_020 Hb_001168_040--Hb_001288_080 Hb_000421_120 Hb_000421_120 Hb_001168_040--Hb_000421_120 Hb_000406_240 Hb_000406_240 Hb_001168_040--Hb_000406_240 Hb_000394_190 Hb_000394_190 Hb_001168_040--Hb_000394_190 Hb_052764_050 Hb_052764_050 Hb_001610_110--Hb_052764_050 Hb_001610_110--Hb_004324_340 Hb_001610_110--Hb_001288_080 Hb_000621_080 Hb_000621_080 Hb_001610_110--Hb_000621_080 Hb_086639_070 Hb_086639_070 Hb_001610_110--Hb_086639_070 Hb_001288_080--Hb_001720_010 Hb_001288_080--Hb_052764_050 Hb_001288_080--Hb_004324_340 Hb_001720_010--Hb_001610_110 Hb_001720_010--Hb_004324_340 Hb_001720_010--Hb_001168_040 Hb_000244_300 Hb_000244_300 Hb_001720_010--Hb_000244_300 Hb_076693_020 Hb_076693_020 Hb_023827_040--Hb_076693_020 Hb_045793_010 Hb_045793_010 Hb_023827_040--Hb_045793_010 Hb_000865_080 Hb_000865_080 Hb_023827_040--Hb_000865_080 Hb_000025_360 Hb_000025_360 Hb_023827_040--Hb_000025_360 Hb_000224_060 Hb_000224_060 Hb_023827_040--Hb_000224_060 Hb_023827_040--Hb_001610_110 Hb_173953_010 Hb_173953_010 Hb_004324_340--Hb_173953_010 Hb_005928_110 Hb_005928_110 Hb_004324_340--Hb_005928_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
75.9167 58.8796 24.3976 13.7994 39.2855 53.6742
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.6423 51.3676 28.7467 23.0288 15.1869

CAGE analysis