Hb_001623_190

Information

Type -
Description -
Location Contig1623: 104975-109203
Sequence    

Annotation

kegg
ID pop:POPTR_0003s17390g
description POPTRDRAFT_554815; hypothetical protein
nr
ID XP_012077673.1
description PREDICTED: uncharacterized protein LOC105638473 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KNJ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12928 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14692: 105264-105633 , PASA_asmbl_14693: 106301-106596
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_190 0.0 - - PREDICTED: uncharacterized protein LOC105638473 [Jatropha curcas]
2 Hb_000548_070 0.103466577 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
3 Hb_002631_130 0.1186876405 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
4 Hb_001728_140 0.1196374241 - - -
5 Hb_007933_040 0.1216467066 - - PREDICTED: probable beta-D-xylosidase 6 isoform X2 [Jatropha curcas]
6 Hb_009615_060 0.1218580812 - - PREDICTED: prolyl endopeptidase-like [Jatropha curcas]
7 Hb_003044_080 0.1229887867 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
8 Hb_000209_100 0.1238525124 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X2 [Jatropha curcas]
9 Hb_007416_110 0.1269467426 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
10 Hb_001205_080 0.1271173184 - - Protein FAM96B, putative [Ricinus communis]
11 Hb_000465_150 0.1275782299 - - PREDICTED: peroxisomal acyl-coenzyme A oxidase 1 [Jatropha curcas]
12 Hb_002686_200 0.1286085146 - - glucosidase II beta subunit, putative [Ricinus communis]
13 Hb_000107_270 0.1297963199 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
14 Hb_001493_150 0.1307438309 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
15 Hb_000683_050 0.1330628265 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
16 Hb_001769_060 0.1334604299 - - PREDICTED: F-box protein At3g12350 isoform X1 [Jatropha curcas]
17 Hb_000896_050 0.1337584309 - - PREDICTED: uncharacterized protein LOC105637668 [Jatropha curcas]
18 Hb_183867_010 0.1338282715 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Populus euphratica]
19 Hb_002281_020 0.1352203357 - - PREDICTED: actin-related protein 8 [Jatropha curcas]
20 Hb_124315_010 0.1352930678 - - PREDICTED: uncharacterized protein LOC105650413 [Jatropha curcas]

Gene co-expression network

sample Hb_001623_190 Hb_001623_190 Hb_000548_070 Hb_000548_070 Hb_001623_190--Hb_000548_070 Hb_002631_130 Hb_002631_130 Hb_001623_190--Hb_002631_130 Hb_001728_140 Hb_001728_140 Hb_001623_190--Hb_001728_140 Hb_007933_040 Hb_007933_040 Hb_001623_190--Hb_007933_040 Hb_009615_060 Hb_009615_060 Hb_001623_190--Hb_009615_060 Hb_003044_080 Hb_003044_080 Hb_001623_190--Hb_003044_080 Hb_000548_070--Hb_001728_140 Hb_000548_070--Hb_009615_060 Hb_000548_070--Hb_003044_080 Hb_001510_020 Hb_001510_020 Hb_000548_070--Hb_001510_020 Hb_000800_090 Hb_000800_090 Hb_000548_070--Hb_000800_090 Hb_000251_030 Hb_000251_030 Hb_000548_070--Hb_000251_030 Hb_002631_130--Hb_009615_060 Hb_000197_190 Hb_000197_190 Hb_002631_130--Hb_000197_190 Hb_000494_030 Hb_000494_030 Hb_002631_130--Hb_000494_030 Hb_000768_160 Hb_000768_160 Hb_002631_130--Hb_000768_160 Hb_000683_050 Hb_000683_050 Hb_002631_130--Hb_000683_050 Hb_002631_130--Hb_000548_070 Hb_001728_140--Hb_009615_060 Hb_001493_150 Hb_001493_150 Hb_001728_140--Hb_001493_150 Hb_001728_140--Hb_000251_030 Hb_001728_140--Hb_001510_020 Hb_002477_290 Hb_002477_290 Hb_001728_140--Hb_002477_290 Hb_011537_060 Hb_011537_060 Hb_007933_040--Hb_011537_060 Hb_003159_050 Hb_003159_050 Hb_007933_040--Hb_003159_050 Hb_007741_120 Hb_007741_120 Hb_007933_040--Hb_007741_120 Hb_106890_010 Hb_106890_010 Hb_007933_040--Hb_106890_010 Hb_003340_010 Hb_003340_010 Hb_007933_040--Hb_003340_010 Hb_002686_200 Hb_002686_200 Hb_007933_040--Hb_002686_200 Hb_009615_060--Hb_001493_150 Hb_009615_060--Hb_003159_050 Hb_012393_030 Hb_012393_030 Hb_009615_060--Hb_012393_030 Hb_003044_080--Hb_000800_090 Hb_003044_080--Hb_009615_060 Hb_003044_080--Hb_001728_140 Hb_003044_080--Hb_002631_130 Hb_000950_010 Hb_000950_010 Hb_003044_080--Hb_000950_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.409255 0.327841 0.785598 0.958265 0.0743894 0.278008
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.333882 0.365552 0.590004 1.41363 1.02366

CAGE analysis