Hb_001623_240

Information

Type -
Description -
Location Contig1623: 138425-141921
Sequence    

Annotation

kegg
ID aly:ARALYDRAFT_484191
description hypothetical protein
nr
ID CAN78490.1
description hypothetical protein VITISV_004933 [Vitis vinifera]
swissprot
ID F6HS55
description Inosine triphosphate pyrophosphatase OS=Vitis vinifera GN=VIT_05s0051g00580 PE=2 SV=1
trembl
ID A5AZ69
description Inosine triphosphate pyrophosphatase OS=Vitis vinifera GN=VITISV_004933 PE=3 SV=1
Gene Ontology
ID GO:0005737
description inosine triphosphate pyrophosphatase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14695: 138420-141904
cDNA
(Sanger)
(ID:Location)		 002_N11.ab1: 138471-141396 , 008_E09.ab1: 138419-141243 , 046_L19.ab1: 138420-141389

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_240 0.0 - - hypothetical protein VITISV_004933 [Vitis vinifera]
2 Hb_011931_050 0.0944595928 - - fk506-binding protein, putative [Ricinus communis]
3 Hb_002529_100 0.0963880366 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
4 Hb_004607_140 0.0968447646 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
5 Hb_004724_140 0.1011880537 transcription factor TF Family: NF-YB PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
6 Hb_000163_200 0.1090754872 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
7 Hb_000699_110 0.1128677221 - - hypothetical protein POPTR_0013s04180g [Populus trichocarpa]
8 Hb_000041_080 0.1137439388 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
9 Hb_003057_050 0.1138789129 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
10 Hb_000045_190 0.1144311858 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
11 Hb_002447_030 0.1151941515 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
12 Hb_000008_320 0.1177520405 - - PREDICTED: uncharacterized protein LOC105628090 [Jatropha curcas]
13 Hb_070986_010 0.1233357483 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
14 Hb_000798_030 0.1236529693 - - PREDICTED: uncharacterized protein LOC105635919 [Jatropha curcas]
15 Hb_001153_080 0.1237885177 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL19 [Jatropha curcas]
16 Hb_001951_110 0.1253010928 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]
17 Hb_003185_020 0.125383541 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
18 Hb_000316_110 0.1256363361 - - Dolichyl-phosphate beta-glucosyltransferase, putative [Ricinus communis]
19 Hb_001999_120 0.1259596538 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
20 Hb_001221_410 0.1278315994 - - PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001623_240 Hb_001623_240 Hb_011931_050 Hb_011931_050 Hb_001623_240--Hb_011931_050 Hb_002529_100 Hb_002529_100 Hb_001623_240--Hb_002529_100 Hb_004607_140 Hb_004607_140 Hb_001623_240--Hb_004607_140 Hb_004724_140 Hb_004724_140 Hb_001623_240--Hb_004724_140 Hb_000163_200 Hb_000163_200 Hb_001623_240--Hb_000163_200 Hb_000699_110 Hb_000699_110 Hb_001623_240--Hb_000699_110 Hb_070986_010 Hb_070986_010 Hb_011931_050--Hb_070986_010 Hb_000316_110 Hb_000316_110 Hb_011931_050--Hb_000316_110 Hb_000061_330 Hb_000061_330 Hb_011931_050--Hb_000061_330 Hb_000045_190 Hb_000045_190 Hb_011931_050--Hb_000045_190 Hb_000634_050 Hb_000634_050 Hb_011931_050--Hb_000634_050 Hb_001257_080 Hb_001257_080 Hb_002529_100--Hb_001257_080 Hb_001951_110 Hb_001951_110 Hb_002529_100--Hb_001951_110 Hb_000798_030 Hb_000798_030 Hb_002529_100--Hb_000798_030 Hb_000023_230 Hb_000023_230 Hb_002529_100--Hb_000023_230 Hb_002529_100--Hb_000045_190 Hb_000056_340 Hb_000056_340 Hb_002529_100--Hb_000056_340 Hb_000272_100 Hb_000272_100 Hb_004607_140--Hb_000272_100 Hb_157854_010 Hb_157854_010 Hb_004607_140--Hb_157854_010 Hb_004204_030 Hb_004204_030 Hb_004607_140--Hb_004204_030 Hb_004607_140--Hb_000163_200 Hb_006824_020 Hb_006824_020 Hb_004607_140--Hb_006824_020 Hb_000732_260 Hb_000732_260 Hb_004607_140--Hb_000732_260 Hb_003777_180 Hb_003777_180 Hb_004724_140--Hb_003777_180 Hb_004724_140--Hb_002529_100 Hb_004116_080 Hb_004116_080 Hb_004724_140--Hb_004116_080 Hb_004724_140--Hb_011931_050 Hb_001341_130 Hb_001341_130 Hb_004724_140--Hb_001341_130 Hb_004242_080 Hb_004242_080 Hb_000163_200--Hb_004242_080 Hb_000163_200--Hb_001951_110 Hb_000163_200--Hb_157854_010 Hb_000417_110 Hb_000417_110 Hb_000163_200--Hb_000417_110 Hb_000479_180 Hb_000479_180 Hb_000163_200--Hb_000479_180 Hb_025246_010 Hb_025246_010 Hb_000699_110--Hb_025246_010 Hb_000261_510 Hb_000261_510 Hb_000699_110--Hb_000261_510 Hb_000175_040 Hb_000175_040 Hb_000699_110--Hb_000175_040 Hb_003057_050 Hb_003057_050 Hb_000699_110--Hb_003057_050 Hb_000699_110--Hb_004724_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
214.858 38.5769 33.6529 45.9905 140.14 116.542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
378.181 215.051 93.7075 55.4999 13.7639

CAGE analysis