Hb_001623_270

Information

Type transcription factor
Description TF Family: PHD
Location Contig1623: 177355-184051
Sequence    

Annotation

kegg
ID rcu:RCOM_1023520
description Inhibitor of growth protein, putative
nr
ID XP_002518170.1
description Inhibitor of growth protein, putative [Ricinus communis]
swissprot
ID Q9LIQ6
description PHD finger protein ING1 OS=Arabidopsis thaliana GN=ING1 PE=1 SV=1
trembl
ID B9RWQ1
description PHD finger protein ING OS=Ricinus communis GN=RCOM_1023520 PE=3 SV=1
Gene Ontology
ID GO:0005634
description phd finger protein ing1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14699: 176563-182944 , PASA_asmbl_14700: 178486-178758
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_270 0.0 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
2 Hb_000176_020 0.0609926471 - - PREDICTED: nuclear pore complex protein NUP43 [Jatropha curcas]
3 Hb_183433_010 0.0625520154 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
4 Hb_000789_320 0.0631795667 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
5 Hb_171900_090 0.0654361636 - - conserved hypothetical protein [Ricinus communis]
6 Hb_014834_150 0.0687768012 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
7 Hb_000230_400 0.0691450432 - - PREDICTED: protein ABCI12, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_065525_080 0.0699338228 - - PREDICTED: ubiquitin-conjugating enzyme E2 14 [Populus euphratica]
9 Hb_000304_070 0.072517817 - - non-canonical ubiquitin conjugating enzyme, putative [Ricinus communis]
10 Hb_030414_040 0.0740520448 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
11 Hb_003861_060 0.075247043 - - PREDICTED: treacle protein [Jatropha curcas]
12 Hb_005588_080 0.0759997413 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]
13 Hb_000749_010 0.0763780454 - - PREDICTED: non-canonical poly(A) RNA polymerase PAPD5 isoform X1 [Jatropha curcas]
14 Hb_005494_010 0.0768899434 - - catalytic, putative [Ricinus communis]
15 Hb_001025_090 0.0772401422 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
16 Hb_021374_030 0.0775077839 - - hypothetical protein RCOM_0351490 [Ricinus communis]
17 Hb_000339_040 0.0785327023 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
18 Hb_003647_140 0.0798239269 - - PREDICTED: uncharacterized protein LOC105646673 [Jatropha curcas]
19 Hb_093666_010 0.080031267 - - BnaC05g06620D [Brassica napus]
20 Hb_000373_050 0.0802320268 - - PREDICTED: protein WHI3 [Jatropha curcas]

Gene co-expression network

sample Hb_001623_270 Hb_001623_270 Hb_000176_020 Hb_000176_020 Hb_001623_270--Hb_000176_020 Hb_183433_010 Hb_183433_010 Hb_001623_270--Hb_183433_010 Hb_000789_320 Hb_000789_320 Hb_001623_270--Hb_000789_320 Hb_171900_090 Hb_171900_090 Hb_001623_270--Hb_171900_090 Hb_014834_150 Hb_014834_150 Hb_001623_270--Hb_014834_150 Hb_000230_400 Hb_000230_400 Hb_001623_270--Hb_000230_400 Hb_000176_020--Hb_171900_090 Hb_001025_090 Hb_001025_090 Hb_000176_020--Hb_001025_090 Hb_000230_460 Hb_000230_460 Hb_000176_020--Hb_000230_460 Hb_000699_150 Hb_000699_150 Hb_000176_020--Hb_000699_150 Hb_000176_020--Hb_000789_320 Hb_000976_140 Hb_000976_140 Hb_183433_010--Hb_000976_140 Hb_183433_010--Hb_171900_090 Hb_002413_010 Hb_002413_010 Hb_183433_010--Hb_002413_010 Hb_000189_600 Hb_000189_600 Hb_183433_010--Hb_000189_600 Hb_007248_030 Hb_007248_030 Hb_183433_010--Hb_007248_030 Hb_000365_230 Hb_000365_230 Hb_183433_010--Hb_000365_230 Hb_000789_320--Hb_171900_090 Hb_000339_040 Hb_000339_040 Hb_000789_320--Hb_000339_040 Hb_000789_320--Hb_001025_090 Hb_000866_310 Hb_000866_310 Hb_000789_320--Hb_000866_310 Hb_001153_210 Hb_001153_210 Hb_000789_320--Hb_001153_210 Hb_164390_010 Hb_164390_010 Hb_171900_090--Hb_164390_010 Hb_002272_050 Hb_002272_050 Hb_171900_090--Hb_002272_050 Hb_171900_090--Hb_001025_090 Hb_003861_060 Hb_003861_060 Hb_014834_150--Hb_003861_060 Hb_003513_010 Hb_003513_010 Hb_014834_150--Hb_003513_010 Hb_000816_250 Hb_000816_250 Hb_014834_150--Hb_000816_250 Hb_003647_140 Hb_003647_140 Hb_014834_150--Hb_003647_140 Hb_003428_010 Hb_003428_010 Hb_014834_150--Hb_003428_010 Hb_004052_080 Hb_004052_080 Hb_014834_150--Hb_004052_080 Hb_005588_080 Hb_005588_080 Hb_000230_400--Hb_005588_080 Hb_000375_390 Hb_000375_390 Hb_000230_400--Hb_000375_390 Hb_000292_100 Hb_000292_100 Hb_000230_400--Hb_000292_100 Hb_000059_380 Hb_000059_380 Hb_000230_400--Hb_000059_380 Hb_000035_090 Hb_000035_090 Hb_000230_400--Hb_000035_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.19475 6.5568 10.8298 6.39552 5.1858 4.65321
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.98448 7.91611 3.49429 5.89959 8.5287

CAGE analysis