Hb_001623_300

Information

Type -
Description -
Location Contig1623: 206289-206599
Sequence    

Annotation

kegg
ID rcu:RCOM_1023540
description NADH dehydrogenase, putative (EC:1.6.99.3)
nr
ID XP_012077666.1
description PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
swissprot
ID O49313
description NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B OS=Arabidopsis thaliana GN=At2g33220 PE=2 SV=1
trembl
ID A0A067KB62
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12921 PE=4 SV=1
Gene Ontology
ID GO:0005747
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_300 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
2 Hb_001623_290 0.0429505494 - - unknown [Populus trichocarpa]
3 Hb_000429_250 0.0891733521 - - hypothetical protein L484_000744 [Morus notabilis]
4 Hb_006663_090 0.1277184341 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
5 Hb_010964_020 0.1291069145 - - RNA helicase [Arabidopsis thaliana]
6 Hb_106415_010 0.1353089013 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
7 Hb_142751_010 0.1360130623 - - conserved hypothetical protein [Ricinus communis]
8 Hb_112047_010 0.1367603924 - - -
9 Hb_002192_090 0.1404559136 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
10 Hb_010565_010 0.1427055376 - - PREDICTED: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X2 [Populus euphratica]
11 Hb_128998_010 0.14796254 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
12 Hb_002687_080 0.1491937993 - - hypothetical protein JCGZ_06535 [Jatropha curcas]
13 Hb_001386_140 0.1506968537 - - PREDICTED: B2 protein [Jatropha curcas]
14 Hb_003371_170 0.1514832023 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000825_030 0.1544122439 - - zinc binding dehydrogenase, putative [Ricinus communis]
16 Hb_099878_050 0.1559269525 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]
17 Hb_005023_030 0.1624046771 - - PREDICTED: uncharacterized protein LOC103417254 [Malus domestica]
18 Hb_001767_120 0.164225451 - - -
19 Hb_070469_010 0.1642622099 - - hypothetical protein POPTR_0002s21850g [Populus trichocarpa]
20 Hb_000991_070 0.1665153772 - - phytochrome A specific signal transduction component family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001623_300 Hb_001623_300 Hb_001623_290 Hb_001623_290 Hb_001623_300--Hb_001623_290 Hb_000429_250 Hb_000429_250 Hb_001623_300--Hb_000429_250 Hb_006663_090 Hb_006663_090 Hb_001623_300--Hb_006663_090 Hb_010964_020 Hb_010964_020 Hb_001623_300--Hb_010964_020 Hb_106415_010 Hb_106415_010 Hb_001623_300--Hb_106415_010 Hb_142751_010 Hb_142751_010 Hb_001623_300--Hb_142751_010 Hb_001623_290--Hb_000429_250 Hb_112047_010 Hb_112047_010 Hb_001623_290--Hb_112047_010 Hb_001623_290--Hb_010964_020 Hb_001623_290--Hb_006663_090 Hb_002687_080 Hb_002687_080 Hb_001623_290--Hb_002687_080 Hb_000429_250--Hb_112047_010 Hb_000429_250--Hb_142751_010 Hb_128998_010 Hb_128998_010 Hb_000429_250--Hb_128998_010 Hb_001767_120 Hb_001767_120 Hb_000429_250--Hb_001767_120 Hb_000825_030 Hb_000825_030 Hb_006663_090--Hb_000825_030 Hb_001386_140 Hb_001386_140 Hb_006663_090--Hb_001386_140 Hb_115477_010 Hb_115477_010 Hb_006663_090--Hb_115477_010 Hb_068014_010 Hb_068014_010 Hb_006663_090--Hb_068014_010 Hb_006487_060 Hb_006487_060 Hb_006663_090--Hb_006487_060 Hb_005679_070 Hb_005679_070 Hb_006663_090--Hb_005679_070 Hb_178620_010 Hb_178620_010 Hb_010964_020--Hb_178620_010 Hb_068569_010 Hb_068569_010 Hb_010964_020--Hb_068569_010 Hb_002192_090 Hb_002192_090 Hb_010964_020--Hb_002192_090 Hb_025905_020 Hb_025905_020 Hb_010964_020--Hb_025905_020 Hb_099878_050 Hb_099878_050 Hb_106415_010--Hb_099878_050 Hb_033385_010 Hb_033385_010 Hb_106415_010--Hb_033385_010 Hb_007083_020 Hb_007083_020 Hb_106415_010--Hb_007083_020 Hb_019053_010 Hb_019053_010 Hb_106415_010--Hb_019053_010 Hb_007333_040 Hb_007333_040 Hb_106415_010--Hb_007333_040 Hb_106415_010--Hb_000825_030 Hb_015354_010 Hb_015354_010 Hb_142751_010--Hb_015354_010 Hb_142751_010--Hb_001767_120 Hb_088428_010 Hb_088428_010 Hb_142751_010--Hb_088428_010 Hb_142751_010--Hb_001623_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
378.288 150.036 245.431 800.153 215.929 1286.27
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
218.989 216.359 167.962 118.908 86.9717

CAGE analysis