Hb_001623_310

Information

Type -
Description -
Location Contig1623: 207359-208674
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa024656mg
description hypothetical protein
nr
ID KDO39562.1
description hypothetical protein CISIN_1g042596mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067DKL9
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g042596mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_310 0.0 - - hypothetical protein CISIN_1g042596mg [Citrus sinensis]
2 Hb_025669_030 0.0544542427 - - PREDICTED: uncharacterized protein LOC105649301 [Jatropha curcas]
3 Hb_000392_460 0.2264226837 - - Pectate lyase precursor, putative [Ricinus communis]
4 Hb_083822_010 0.2271164925 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_021346_040 0.2716324563 - - hypothetical protein JCGZ_26751 [Jatropha curcas]
6 Hb_171062_010 0.2750704692 - - hypothetical protein VITISV_036059 [Vitis vinifera]
7 Hb_059481_010 0.2903128794 - - hypothetical protein POPTR_0008s06860g [Populus trichocarpa]
8 Hb_004522_020 0.302474178 - - PREDICTED: uncharacterized protein LOC105646836 [Jatropha curcas]
9 Hb_003938_030 0.3128234047 transcription factor TF Family: ERF ethylene-responsive transcription factor 2 [Hevea brasiliensis]
10 Hb_000696_020 0.3163428404 - - hypothetical protein JCGZ_25344 [Jatropha curcas]
11 Hb_000853_040 0.3432139152 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000375_230 0.3443370163 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
13 Hb_172179_010 0.3468553648 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
14 Hb_007140_010 0.3471280879 - - -
15 Hb_011505_010 0.3563948871 - - -
16 Hb_008221_020 0.3573502242 - - hypothetical protein JCGZ_15014 [Jatropha curcas]
17 Hb_000111_400 0.3586139803 - - hypothetical protein POPTR_0003s19310g [Populus trichocarpa]
18 Hb_000069_580 0.3594932897 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004129_080 0.3595846192 - - PREDICTED: putative DNA-binding protein ESCAROLA [Prunus mume]
20 Hb_002435_020 0.3654893399 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]

Gene co-expression network

sample Hb_001623_310 Hb_001623_310 Hb_025669_030 Hb_025669_030 Hb_001623_310--Hb_025669_030 Hb_000392_460 Hb_000392_460 Hb_001623_310--Hb_000392_460 Hb_083822_010 Hb_083822_010 Hb_001623_310--Hb_083822_010 Hb_021346_040 Hb_021346_040 Hb_001623_310--Hb_021346_040 Hb_171062_010 Hb_171062_010 Hb_001623_310--Hb_171062_010 Hb_059481_010 Hb_059481_010 Hb_001623_310--Hb_059481_010 Hb_025669_030--Hb_000392_460 Hb_025669_030--Hb_083822_010 Hb_025669_030--Hb_021346_040 Hb_025669_030--Hb_171062_010 Hb_000696_020 Hb_000696_020 Hb_025669_030--Hb_000696_020 Hb_000392_460--Hb_021346_040 Hb_000392_460--Hb_083822_010 Hb_000853_040 Hb_000853_040 Hb_000392_460--Hb_000853_040 Hb_003938_030 Hb_003938_030 Hb_000392_460--Hb_003938_030 Hb_083822_010--Hb_021346_040 Hb_083822_010--Hb_003938_030 Hb_000375_230 Hb_000375_230 Hb_083822_010--Hb_000375_230 Hb_083822_010--Hb_000853_040 Hb_021346_040--Hb_000853_040 Hb_167452_010 Hb_167452_010 Hb_021346_040--Hb_167452_010 Hb_021346_040--Hb_003938_030 Hb_003902_060 Hb_003902_060 Hb_171062_010--Hb_003902_060 Hb_002447_160 Hb_002447_160 Hb_171062_010--Hb_002447_160 Hb_000045_280 Hb_000045_280 Hb_171062_010--Hb_000045_280 Hb_003768_060 Hb_003768_060 Hb_171062_010--Hb_003768_060 Hb_002874_210 Hb_002874_210 Hb_059481_010--Hb_002874_210 Hb_001007_090 Hb_001007_090 Hb_059481_010--Hb_001007_090 Hb_005694_070 Hb_005694_070 Hb_059481_010--Hb_005694_070 Hb_123475_020 Hb_123475_020 Hb_059481_010--Hb_123475_020 Hb_000042_020 Hb_000042_020 Hb_059481_010--Hb_000042_020 Hb_059481_010--Hb_002447_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0355559 0.0571347 0.203121 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.102396 0 0 0

CAGE analysis