Hb_001623_330

Information

Type -
Description -
Location Contig1623: 211821-215443
Sequence    

Annotation

kegg
ID rcu:RCOM_1023650
description hypothetical protein
nr
ID XP_012077663.1
description PREDICTED: uncharacterized protein LOC105638463 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KNI3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12918 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14705: 211889-215296 , PASA_asmbl_14706: 211879-215244 , PASA_asmbl_14707: 214467-214741
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_330 0.0 - - PREDICTED: uncharacterized protein LOC105638463 [Jatropha curcas]
2 Hb_001369_650 0.0806215549 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
3 Hb_000866_300 0.0879633397 - - hypothetical protein CICLE_v10023145mg [Citrus clementina]
4 Hb_003001_060 0.0888458771 - - wound-responsive family protein [Populus trichocarpa]
5 Hb_000392_270 0.0896072327 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
6 Hb_000977_080 0.089858247 - - type II inositol 5-phosphatase, putative [Ricinus communis]
7 Hb_000045_130 0.0935195555 - - 60S acidic ribosomal protein P0A [Hevea brasiliensis]
8 Hb_001951_110 0.0950435242 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]
9 Hb_000260_050 0.0953705546 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
10 Hb_003029_080 0.0956893189 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
11 Hb_052135_030 0.1021073522 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
12 Hb_001754_150 0.1051321543 - - PREDICTED: vesicle-associated membrane protein 724 [Jatropha curcas]
13 Hb_000483_160 0.1056645837 - - PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]
14 Hb_004204_030 0.1073414338 - - unknown [Populus trichocarpa]
15 Hb_010449_020 0.1086167654 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
16 Hb_002784_040 0.1088184992 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
17 Hb_003551_020 0.1093445941 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
18 Hb_000190_060 0.1096234729 - - PREDICTED: uncharacterized protein LOC105644688 isoform X1 [Jatropha curcas]
19 Hb_003752_110 0.1099382733 - - -
20 Hb_004645_050 0.1100445043 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]

Gene co-expression network

sample Hb_001623_330 Hb_001623_330 Hb_001369_650 Hb_001369_650 Hb_001623_330--Hb_001369_650 Hb_000866_300 Hb_000866_300 Hb_001623_330--Hb_000866_300 Hb_003001_060 Hb_003001_060 Hb_001623_330--Hb_003001_060 Hb_000392_270 Hb_000392_270 Hb_001623_330--Hb_000392_270 Hb_000977_080 Hb_000977_080 Hb_001623_330--Hb_000977_080 Hb_000045_130 Hb_000045_130 Hb_001623_330--Hb_000045_130 Hb_001369_650--Hb_000392_270 Hb_001369_650--Hb_000045_130 Hb_011360_140 Hb_011360_140 Hb_001369_650--Hb_011360_140 Hb_001369_650--Hb_003001_060 Hb_001369_650--Hb_000977_080 Hb_009767_120 Hb_009767_120 Hb_001369_650--Hb_009767_120 Hb_001951_110 Hb_001951_110 Hb_000866_300--Hb_001951_110 Hb_001804_040 Hb_001804_040 Hb_000866_300--Hb_001804_040 Hb_004204_030 Hb_004204_030 Hb_000866_300--Hb_004204_030 Hb_000866_300--Hb_000977_080 Hb_000866_300--Hb_000392_270 Hb_000260_050 Hb_000260_050 Hb_000866_300--Hb_000260_050 Hb_003878_190 Hb_003878_190 Hb_003001_060--Hb_003878_190 Hb_011805_080 Hb_011805_080 Hb_003001_060--Hb_011805_080 Hb_002893_060 Hb_002893_060 Hb_003001_060--Hb_002893_060 Hb_003058_070 Hb_003058_070 Hb_003001_060--Hb_003058_070 Hb_000417_110 Hb_000417_110 Hb_003001_060--Hb_000417_110 Hb_000392_270--Hb_000977_080 Hb_003540_040 Hb_003540_040 Hb_000392_270--Hb_003540_040 Hb_003551_020 Hb_003551_020 Hb_000392_270--Hb_003551_020 Hb_000392_270--Hb_003878_190 Hb_000392_270--Hb_011360_140 Hb_000977_080--Hb_003551_020 Hb_000977_080--Hb_000045_130 Hb_004645_050 Hb_004645_050 Hb_000977_080--Hb_004645_050 Hb_000019_230 Hb_000019_230 Hb_000977_080--Hb_000019_230 Hb_000045_130--Hb_003551_020 Hb_000045_130--Hb_000392_270 Hb_005489_130 Hb_005489_130 Hb_000045_130--Hb_005489_130 Hb_000045_130--Hb_000019_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
253.765 97.4217 56.3058 23.379 267.495 215.979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
238.614 405.579 121.172 46.1991 24.4908

CAGE analysis