Hb_001623_370

Information

Type -
Description -
Location Contig1623: 250782-261801
Sequence    

Annotation

kegg
ID rcu:RCOM_1023810
description hypothetical protein
nr
ID XP_002518189.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RWS0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1023810 PE=4 SV=1
Gene Ontology
ID GO:0044767
description blister-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14709: 250900-261764 , PASA_asmbl_14710: 257915-258612
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_370 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000714_020 0.0649197006 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
3 Hb_001514_020 0.0749293353 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
4 Hb_004502_030 0.0820800064 - - unknown [Populus trichocarpa]
5 Hb_011609_030 0.0840589035 - - conserved hypothetical protein 13 [Hevea brasiliensis]
6 Hb_007992_030 0.0854157809 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
7 Hb_001663_110 0.0879898863 - - RNA binding protein, putative [Ricinus communis]
8 Hb_005741_020 0.0885675486 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
9 Hb_000847_070 0.0891273184 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
10 Hb_000976_270 0.089898212 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
11 Hb_001493_100 0.0916440016 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
12 Hb_006637_060 0.0945438832 - - PREDICTED: uncharacterized protein LOC105649300 [Jatropha curcas]
13 Hb_143766_090 0.0981370496 - - 60S ribosomal protein L31B [Hevea brasiliensis]
14 Hb_004137_030 0.0988022947 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001956_120 0.1031941702 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004374_010 0.1033759439 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
17 Hb_005489_130 0.1034166801 - - calmodulin, putative [Ricinus communis]
18 Hb_003688_100 0.1057774754 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
19 Hb_004447_030 0.1076377304 - - PREDICTED: glucose-induced degradation protein 4 homolog [Jatropha curcas]
20 Hb_003633_130 0.107735815 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]

Gene co-expression network

sample Hb_001623_370 Hb_001623_370 Hb_000714_020 Hb_000714_020 Hb_001623_370--Hb_000714_020 Hb_001514_020 Hb_001514_020 Hb_001623_370--Hb_001514_020 Hb_004502_030 Hb_004502_030 Hb_001623_370--Hb_004502_030 Hb_011609_030 Hb_011609_030 Hb_001623_370--Hb_011609_030 Hb_007992_030 Hb_007992_030 Hb_001623_370--Hb_007992_030 Hb_001663_110 Hb_001663_110 Hb_001623_370--Hb_001663_110 Hb_000714_020--Hb_011609_030 Hb_001493_100 Hb_001493_100 Hb_000714_020--Hb_001493_100 Hb_000714_020--Hb_001514_020 Hb_002619_010 Hb_002619_010 Hb_000714_020--Hb_002619_010 Hb_004374_010 Hb_004374_010 Hb_000714_020--Hb_004374_010 Hb_003688_100 Hb_003688_100 Hb_001514_020--Hb_003688_100 Hb_000847_070 Hb_000847_070 Hb_001514_020--Hb_000847_070 Hb_143766_090 Hb_143766_090 Hb_001514_020--Hb_143766_090 Hb_001514_020--Hb_004502_030 Hb_001514_020--Hb_007992_030 Hb_004502_030--Hb_000847_070 Hb_004502_030--Hb_007992_030 Hb_004096_170 Hb_004096_170 Hb_004502_030--Hb_004096_170 Hb_000345_560 Hb_000345_560 Hb_004502_030--Hb_000345_560 Hb_003633_130 Hb_003633_130 Hb_004502_030--Hb_003633_130 Hb_004232_010 Hb_004232_010 Hb_011609_030--Hb_004232_010 Hb_005741_020 Hb_005741_020 Hb_011609_030--Hb_005741_020 Hb_011930_010 Hb_011930_010 Hb_011609_030--Hb_011930_010 Hb_001956_120 Hb_001956_120 Hb_011609_030--Hb_001956_120 Hb_007992_030--Hb_000847_070 Hb_007992_030--Hb_000345_560 Hb_007992_030--Hb_001493_100 Hb_004813_010 Hb_004813_010 Hb_007992_030--Hb_004813_010 Hb_000976_270 Hb_000976_270 Hb_001663_110--Hb_000976_270 Hb_004447_030 Hb_004447_030 Hb_001663_110--Hb_004447_030 Hb_000205_120 Hb_000205_120 Hb_001663_110--Hb_000205_120 Hb_000236_280 Hb_000236_280 Hb_001663_110--Hb_000236_280 Hb_012305_070 Hb_012305_070 Hb_001663_110--Hb_012305_070 Hb_005237_060 Hb_005237_060 Hb_001663_110--Hb_005237_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
134.206 25.375 19.4988 13.2775 80.6664 106.053
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
68.8113 78.7244 31.8839 11.5312 8.23422

CAGE analysis