Hb_001623_400

Information

Type -
Description -
Location Contig1623: 302518-303742
Sequence    

Annotation

kegg
ID rcu:RCOM_1023950
description hypothetical protein
nr
ID XP_002518193.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RWS4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1023950 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14715: 302754-303584 , PASA_asmbl_14716: 303066-303343
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_400 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002042_200 0.0791566136 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
3 Hb_003064_010 0.1107282881 - - Senescence-related gene 1 [Theobroma cacao]
4 Hb_000347_230 0.1110108217 - - inter-alpha-trypsin inhibitor heavy chain, putative [Ricinus communis]
5 Hb_004021_100 0.1146224498 - - -
6 Hb_003734_120 0.1153429498 - - PREDICTED: uncharacterized protein LOC105632812 isoform X1 [Jatropha curcas]
7 Hb_017491_040 0.1244625443 - - PREDICTED: uncharacterized protein LOC105631348 [Jatropha curcas]
8 Hb_018133_110 0.1268047812 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_001369_620 0.1276845194 - - PREDICTED: protein EXORDIUM-like 3 [Jatropha curcas]
10 Hb_000993_020 0.1294043272 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
11 Hb_000029_420 0.1331220518 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
12 Hb_000194_080 0.1339161854 - - hypothetical protein JCGZ_18743 [Jatropha curcas]
13 Hb_000979_080 0.1349992808 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
14 Hb_002301_420 0.1375086045 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
15 Hb_027634_010 0.1378932154 - - protein binding protein, putative [Ricinus communis]
16 Hb_001959_030 0.1387226516 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000175_480 0.1457918584 - - hypothetical protein JCGZ_06165 [Jatropha curcas]
18 Hb_006618_080 0.1458518697 - - PREDICTED: non-specific lipid-transfer protein [Jatropha curcas]
19 Hb_000276_030 0.1468876352 - - dimethylaniline monooxygenase, putative [Ricinus communis]
20 Hb_098030_010 0.1469662903 - - hypothetical protein JCGZ_06251 [Jatropha curcas]

Gene co-expression network

sample Hb_001623_400 Hb_001623_400 Hb_002042_200 Hb_002042_200 Hb_001623_400--Hb_002042_200 Hb_003064_010 Hb_003064_010 Hb_001623_400--Hb_003064_010 Hb_000347_230 Hb_000347_230 Hb_001623_400--Hb_000347_230 Hb_004021_100 Hb_004021_100 Hb_001623_400--Hb_004021_100 Hb_003734_120 Hb_003734_120 Hb_001623_400--Hb_003734_120 Hb_017491_040 Hb_017491_040 Hb_001623_400--Hb_017491_040 Hb_018133_110 Hb_018133_110 Hb_002042_200--Hb_018133_110 Hb_000175_480 Hb_000175_480 Hb_002042_200--Hb_000175_480 Hb_027634_010 Hb_027634_010 Hb_002042_200--Hb_027634_010 Hb_002042_200--Hb_017491_040 Hb_001959_030 Hb_001959_030 Hb_002042_200--Hb_001959_030 Hb_000194_080 Hb_000194_080 Hb_003064_010--Hb_000194_080 Hb_000029_420 Hb_000029_420 Hb_003064_010--Hb_000029_420 Hb_003064_010--Hb_004021_100 Hb_004055_080 Hb_004055_080 Hb_003064_010--Hb_004055_080 Hb_049677_010 Hb_049677_010 Hb_003064_010--Hb_049677_010 Hb_000347_230--Hb_018133_110 Hb_006618_080 Hb_006618_080 Hb_000347_230--Hb_006618_080 Hb_000032_560 Hb_000032_560 Hb_000347_230--Hb_000032_560 Hb_098030_010 Hb_098030_010 Hb_000347_230--Hb_098030_010 Hb_000347_230--Hb_003734_120 Hb_004021_100--Hb_017491_040 Hb_058526_010 Hb_058526_010 Hb_004021_100--Hb_058526_010 Hb_127743_030 Hb_127743_030 Hb_004021_100--Hb_127743_030 Hb_007432_050 Hb_007432_050 Hb_004021_100--Hb_007432_050 Hb_003166_040 Hb_003166_040 Hb_004021_100--Hb_003166_040 Hb_000276_030 Hb_000276_030 Hb_003734_120--Hb_000276_030 Hb_003787_060 Hb_003787_060 Hb_003734_120--Hb_003787_060 Hb_188923_010 Hb_188923_010 Hb_003734_120--Hb_188923_010 Hb_003734_120--Hb_018133_110 Hb_007313_010 Hb_007313_010 Hb_003734_120--Hb_007313_010 Hb_003734_120--Hb_002042_200 Hb_008705_040 Hb_008705_040 Hb_017491_040--Hb_008705_040 Hb_004452_080 Hb_004452_080 Hb_017491_040--Hb_004452_080 Hb_166813_010 Hb_166813_010 Hb_017491_040--Hb_166813_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.354855 7.47718 7.97251 16.7262 0.16643 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 41.2455 0.429369

CAGE analysis