Hb_001623_430

Information

Type -
Description -
Location Contig1623: 338885-339145
Sequence    

Annotation

kegg
ID pop:POPTR_0008s17410g
description hypothetical protein
nr
ID XP_012077649.1
description PREDICTED: small acidic protein 1 [Jatropha curcas]
swissprot
ID Q9T0H2
description Small acidic protein 1 OS=Arabidopsis thaliana GN=SMAP1 PE=1 SV=1
trembl
ID U5G8D5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s17410g PE=4 SV=1
Gene Ontology
ID GO:0006661
description small acidic protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14727: 338914-339568
cDNA
(Sanger)
(ID:Location)		 017_G20.ab1: 338914-339288 , 019_A10.ab1: 338968-339334 , 019_F04.ab1: 338914-339343 , 028_G14.ab1: 338914-339288 , 032_O03.ab1: 338914-339288 , 034_P02.ab1: 338914-339299 , 050_N24.ab1: 338917-339340

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_430 0.0 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
2 Hb_003349_070 0.0938667828 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
3 Hb_030954_020 0.1030841642 - - hypothetical protein RCOM_1330200 [Ricinus communis]
4 Hb_183086_040 0.1043399634 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
5 Hb_000780_210 0.1079627357 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
6 Hb_004333_030 0.1122549235 - - PREDICTED: vacuolar protein sorting-associated protein 26A [Jatropha curcas]
7 Hb_000922_100 0.1141732692 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
8 Hb_004223_260 0.1156731898 - - hypothetical protein F383_09277 [Gossypium arboreum]
9 Hb_000106_100 0.1166130025 - - -
10 Hb_000085_330 0.1166386997 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
11 Hb_001700_020 0.1194815122 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
12 Hb_007520_060 0.1205770339 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
13 Hb_009659_020 0.1219666635 - - PREDICTED: uncharacterized protein LOC103870090 [Brassica rapa]
14 Hb_080477_060 0.1220491253 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000212_470 0.1266469136 - - hypothetical protein CICLE_v10033256mg [Citrus clementina]
16 Hb_000820_130 0.1296999269 - - PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
17 Hb_001123_120 0.1300577954 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
18 Hb_187083_010 0.1308758467 - - PREDICTED: uncharacterized protein LOC105643971 [Jatropha curcas]
19 Hb_004041_040 0.1317089912 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM14-1 [Camelina sativa]
20 Hb_006718_010 0.131838194 - - PREDICTED: histone H2AX-like [Elaeis guineensis]

Gene co-expression network

sample Hb_001623_430 Hb_001623_430 Hb_003349_070 Hb_003349_070 Hb_001623_430--Hb_003349_070 Hb_030954_020 Hb_030954_020 Hb_001623_430--Hb_030954_020 Hb_183086_040 Hb_183086_040 Hb_001623_430--Hb_183086_040 Hb_000780_210 Hb_000780_210 Hb_001623_430--Hb_000780_210 Hb_004333_030 Hb_004333_030 Hb_001623_430--Hb_004333_030 Hb_000922_100 Hb_000922_100 Hb_001623_430--Hb_000922_100 Hb_004223_260 Hb_004223_260 Hb_003349_070--Hb_004223_260 Hb_000106_100 Hb_000106_100 Hb_003349_070--Hb_000106_100 Hb_000819_070 Hb_000819_070 Hb_003349_070--Hb_000819_070 Hb_000085_330 Hb_000085_330 Hb_003349_070--Hb_000085_330 Hb_003349_070--Hb_183086_040 Hb_009659_020 Hb_009659_020 Hb_030954_020--Hb_009659_020 Hb_080477_060 Hb_080477_060 Hb_030954_020--Hb_080477_060 Hb_030954_020--Hb_183086_040 Hb_030954_020--Hb_003349_070 Hb_030954_020--Hb_000106_100 Hb_183086_040--Hb_000922_100 Hb_183086_040--Hb_000780_210 Hb_000896_120 Hb_000896_120 Hb_183086_040--Hb_000896_120 Hb_000215_180 Hb_000215_180 Hb_183086_040--Hb_000215_180 Hb_183086_040--Hb_000085_330 Hb_000224_090 Hb_000224_090 Hb_183086_040--Hb_000224_090 Hb_001377_380 Hb_001377_380 Hb_000780_210--Hb_001377_380 Hb_000635_080 Hb_000635_080 Hb_000780_210--Hb_000635_080 Hb_000820_130 Hb_000820_130 Hb_000780_210--Hb_000820_130 Hb_002316_120 Hb_002316_120 Hb_000780_210--Hb_002316_120 Hb_012539_020 Hb_012539_020 Hb_000780_210--Hb_012539_020 Hb_030565_040 Hb_030565_040 Hb_004333_030--Hb_030565_040 Hb_000318_490 Hb_000318_490 Hb_004333_030--Hb_000318_490 Hb_004333_030--Hb_000896_120 Hb_187083_010 Hb_187083_010 Hb_004333_030--Hb_187083_010 Hb_004333_030--Hb_000106_100 Hb_000922_100--Hb_000215_180 Hb_000922_100--Hb_000896_120 Hb_000329_330 Hb_000329_330 Hb_000922_100--Hb_000329_330 Hb_000722_040 Hb_000722_040 Hb_000922_100--Hb_000722_040 Hb_001545_060 Hb_001545_060 Hb_000922_100--Hb_001545_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
230.971 45.6741 40.3407 249.857 174.814 640.558
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1648.54 1728.24 682.329 485.495 38.5132

CAGE analysis