Hb_001623_490

Information

Type -
Description -
Location Contig1623: 372217-375644
Sequence    

Annotation

kegg
ID rcu:RCOM_1024270
description Phosphoglycolate phosphatase, putative
nr
ID XP_012077642.1
description PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
swissprot
ID Q8RYE9
description Haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 OS=Arabidopsis thaliana GN=At2g33255 PE=2 SV=1
trembl
ID B9RWT6
description Phosphoglycolate phosphatase, putative OS=Ricinus communis GN=RCOM_1024270 PE=4 SV=1
Gene Ontology
ID GO:0009507
description haloacid dehalogenase-like hydrolase domain-containing protein at2g33255

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14734: 372332-375614
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_490 0.0 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
2 Hb_012779_080 0.0583468092 - - PREDICTED: carbon catabolite repressor protein 4 homolog 3 isoform X3 [Jatropha curcas]
3 Hb_000327_330 0.0791184319 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005665_090 0.0792802075 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
5 Hb_002026_090 0.0805192589 - - PREDICTED: ubiquitin-conjugating enzyme E2 4-like [Jatropha curcas]
6 Hb_002218_020 0.0859903806 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
7 Hb_016448_010 0.0868499824 - - Protein MYG1, putative [Ricinus communis]
8 Hb_000645_180 0.0873563724 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase Lipoamide dehydrogenase 1 isoform 1 [Theobroma cacao]
9 Hb_000300_560 0.0875768279 - - PREDICTED: probable glycosyltransferase At5g03795 isoform X1 [Jatropha curcas]
10 Hb_003071_030 0.0876231304 - - PREDICTED: 20 kDa chaperonin, chloroplastic [Jatropha curcas]
11 Hb_000320_190 0.0880693836 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
12 Hb_008375_030 0.0887927409 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X1 [Populus euphratica]
13 Hb_000029_400 0.0896971318 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1 [Jatropha curcas]
14 Hb_003687_080 0.0897941574 - - PREDICTED: casein kinase I-like [Jatropha curcas]
15 Hb_000703_290 0.0905335745 - - aldo/keto reductase, putative [Ricinus communis]
16 Hb_001396_020 0.090868389 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
17 Hb_006816_190 0.0910344599 - - calreticulin family protein [Populus trichocarpa]
18 Hb_004158_050 0.0918483087 - - hypothetical protein JCGZ_09026 [Jatropha curcas]
19 Hb_021596_020 0.092521595 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
20 Hb_000098_240 0.0970634824 - - PREDICTED: UDP-glucose:glycoprotein glucosyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_001623_490 Hb_001623_490 Hb_012779_080 Hb_012779_080 Hb_001623_490--Hb_012779_080 Hb_000327_330 Hb_000327_330 Hb_001623_490--Hb_000327_330 Hb_005665_090 Hb_005665_090 Hb_001623_490--Hb_005665_090 Hb_002026_090 Hb_002026_090 Hb_001623_490--Hb_002026_090 Hb_002218_020 Hb_002218_020 Hb_001623_490--Hb_002218_020 Hb_016448_010 Hb_016448_010 Hb_001623_490--Hb_016448_010 Hb_012779_080--Hb_005665_090 Hb_000320_190 Hb_000320_190 Hb_012779_080--Hb_000320_190 Hb_002915_010 Hb_002915_010 Hb_012779_080--Hb_002915_010 Hb_010620_050 Hb_010620_050 Hb_012779_080--Hb_010620_050 Hb_009288_040 Hb_009288_040 Hb_012779_080--Hb_009288_040 Hb_000318_220 Hb_000318_220 Hb_000327_330--Hb_000318_220 Hb_003687_080 Hb_003687_080 Hb_000327_330--Hb_003687_080 Hb_000086_270 Hb_000086_270 Hb_000327_330--Hb_000086_270 Hb_000327_330--Hb_002218_020 Hb_003071_030 Hb_003071_030 Hb_000327_330--Hb_003071_030 Hb_005665_090--Hb_009288_040 Hb_005665_090--Hb_000320_190 Hb_000645_180 Hb_000645_180 Hb_005665_090--Hb_000645_180 Hb_005665_090--Hb_010620_050 Hb_004158_050 Hb_004158_050 Hb_002026_090--Hb_004158_050 Hb_002026_090--Hb_000327_330 Hb_001160_110 Hb_001160_110 Hb_002026_090--Hb_001160_110 Hb_001663_130 Hb_001663_130 Hb_002026_090--Hb_001663_130 Hb_002026_090--Hb_003687_080 Hb_102948_010 Hb_102948_010 Hb_002218_020--Hb_102948_010 Hb_001430_020 Hb_001430_020 Hb_002218_020--Hb_001430_020 Hb_012438_030 Hb_012438_030 Hb_002218_020--Hb_012438_030 Hb_087313_010 Hb_087313_010 Hb_002218_020--Hb_087313_010 Hb_000663_020 Hb_000663_020 Hb_002218_020--Hb_000663_020 Hb_003883_010 Hb_003883_010 Hb_002218_020--Hb_003883_010 Hb_003506_030 Hb_003506_030 Hb_016448_010--Hb_003506_030 Hb_021596_020 Hb_021596_020 Hb_016448_010--Hb_021596_020 Hb_016448_010--Hb_012438_030 Hb_001504_010 Hb_001504_010 Hb_016448_010--Hb_001504_010 Hb_000098_240 Hb_000098_240 Hb_016448_010--Hb_000098_240 Hb_026234_010 Hb_026234_010 Hb_016448_010--Hb_026234_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.88327 5.23309 16.6892 7.88658 3.79833 3.93053
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.41235 2.71768 1.61923 4.35817 10.0442

CAGE analysis