Hb_001623_500

Information

Type -
Description -
Location Contig1623: 376047-377621
Sequence    

Annotation

kegg
ID pop:POPTR_0004s02730g
description POPTRDRAFT_758536; hypothetical protein
nr
ID XP_012077686.1
description PREDICTED: uncharacterized protein LOC105638487 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KED1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12897 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14734: 372332-375614
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_500 0.0 - - PREDICTED: uncharacterized protein LOC105638487 [Jatropha curcas]
2 Hb_004339_040 0.0861044806 - - hypothetical protein POPTR_0162s00290g, partial [Populus trichocarpa]
3 Hb_001832_200 0.0949756938 - - PREDICTED: PCI domain-containing protein 2 isoform X1 [Jatropha curcas]
4 Hb_007199_020 0.0981778159 - - hypothetical protein CICLE_v10028570mg [Citrus clementina]
5 Hb_187247_020 0.1020069119 - - PREDICTED: uncharacterized protein LOC101220469 [Cucumis sativus]
6 Hb_017193_010 0.1056948619 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
7 Hb_000579_080 0.1089923553 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
8 Hb_005946_040 0.1167343931 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
9 Hb_172979_010 0.1172695479 - - PREDICTED: protein disulfide-isomerase SCO2 [Jatropha curcas]
10 Hb_001438_010 0.1175642452 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
11 Hb_101334_020 0.1192443442 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
12 Hb_001009_140 0.1195950803 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
13 Hb_000330_090 0.1198613954 - - ornithine carbamoyltransferase, putative [Ricinus communis]
14 Hb_049575_010 0.1203264424 - - hypothetical protein POPTR_0001s15330g [Populus trichocarpa]
15 Hb_000116_250 0.1216303254 - - PREDICTED: DNA mismatch repair protein MLH3 [Jatropha curcas]
16 Hb_000926_060 0.1236420453 - - conserved hypothetical protein [Ricinus communis]
17 Hb_029879_060 0.1238493362 - - PREDICTED: adenosine deaminase-like protein [Jatropha curcas]
18 Hb_004109_260 0.125338962 - - hypothetical protein JCGZ_06843 [Jatropha curcas]
19 Hb_005214_170 0.1262748457 - - PREDICTED: uncharacterized protein LOC105636021 [Jatropha curcas]
20 Hb_113347_010 0.126633561 - - hypothetical protein CISIN_1g009336mg [Citrus sinensis]

Gene co-expression network

sample Hb_001623_500 Hb_001623_500 Hb_004339_040 Hb_004339_040 Hb_001623_500--Hb_004339_040 Hb_001832_200 Hb_001832_200 Hb_001623_500--Hb_001832_200 Hb_007199_020 Hb_007199_020 Hb_001623_500--Hb_007199_020 Hb_187247_020 Hb_187247_020 Hb_001623_500--Hb_187247_020 Hb_017193_010 Hb_017193_010 Hb_001623_500--Hb_017193_010 Hb_000579_080 Hb_000579_080 Hb_001623_500--Hb_000579_080 Hb_000880_070 Hb_000880_070 Hb_004339_040--Hb_000880_070 Hb_001824_080 Hb_001824_080 Hb_004339_040--Hb_001824_080 Hb_004109_120 Hb_004109_120 Hb_004339_040--Hb_004109_120 Hb_004109_260 Hb_004109_260 Hb_004339_040--Hb_004109_260 Hb_005946_040 Hb_005946_040 Hb_004339_040--Hb_005946_040 Hb_001105_040 Hb_001105_040 Hb_001832_200--Hb_001105_040 Hb_001882_010 Hb_001882_010 Hb_001832_200--Hb_001882_010 Hb_025194_050 Hb_025194_050 Hb_001832_200--Hb_025194_050 Hb_010863_050 Hb_010863_050 Hb_001832_200--Hb_010863_050 Hb_000108_020 Hb_000108_020 Hb_001832_200--Hb_000108_020 Hb_068079_010 Hb_068079_010 Hb_001832_200--Hb_068079_010 Hb_000330_090 Hb_000330_090 Hb_007199_020--Hb_000330_090 Hb_001804_090 Hb_001804_090 Hb_007199_020--Hb_001804_090 Hb_005214_170 Hb_005214_170 Hb_007199_020--Hb_005214_170 Hb_007904_230 Hb_007904_230 Hb_007199_020--Hb_007904_230 Hb_000174_260 Hb_000174_260 Hb_007199_020--Hb_000174_260 Hb_187247_020--Hb_001882_010 Hb_006573_150 Hb_006573_150 Hb_187247_020--Hb_006573_150 Hb_187247_020--Hb_001832_200 Hb_001009_140 Hb_001009_140 Hb_187247_020--Hb_001009_140 Hb_000116_250 Hb_000116_250 Hb_187247_020--Hb_000116_250 Hb_002871_040 Hb_002871_040 Hb_017193_010--Hb_002871_040 Hb_172979_010 Hb_172979_010 Hb_017193_010--Hb_172979_010 Hb_101334_020 Hb_101334_020 Hb_017193_010--Hb_101334_020 Hb_003835_110 Hb_003835_110 Hb_017193_010--Hb_003835_110 Hb_017193_010--Hb_000579_080 Hb_000926_060 Hb_000926_060 Hb_000579_080--Hb_000926_060 Hb_001504_010 Hb_001504_010 Hb_000579_080--Hb_001504_010 Hb_012633_050 Hb_012633_050 Hb_000579_080--Hb_012633_050 Hb_000229_050 Hb_000229_050 Hb_000579_080--Hb_000229_050 Hb_008206_080 Hb_008206_080 Hb_000579_080--Hb_008206_080 Hb_008304_020 Hb_008304_020 Hb_000579_080--Hb_008304_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.138159 0.166091 0.785064 0.239506 0.147907 0.16561
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.202452 0.27865 0.14655 0.432212 0.57009

CAGE analysis