Hb_001623_510

Information

Type -
Description -
Location Contig1623: 396684-399604
Sequence    

Annotation

kegg
ID rcu:RCOM_1024300
description transporter, putative
nr
ID XP_002518207.1
description transporter, putative [Ricinus communis]
swissprot
ID O22780
description Probable folate-biopterin transporter 9, chloroplastic OS=Arabidopsis thaliana GN=At2g33280 PE=3 SV=2
trembl
ID B9RWT8
description Transporter, putative OS=Ricinus communis GN=RCOM_1024300 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable folate-biopterin transporter chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14735: 396967-398769
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_510 0.0 - - transporter, putative [Ricinus communis]
2 Hb_005489_110 0.0853671298 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
3 Hb_000014_150 0.0995527245 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
4 Hb_001019_060 0.1011376102 - - PREDICTED: eukaryotic peptide chain release factor subunit 1-3 [Jatropha curcas]
5 Hb_007426_030 0.10296798 - - PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Jatropha curcas]
6 Hb_001266_080 0.1039336041 - - PREDICTED: eukaryotic translation initiation factor 2 subunit gamma-like [Jatropha curcas]
7 Hb_034271_030 0.1064738825 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
8 Hb_000832_020 0.1092972784 transcription factor TF Family: B3 hypothetical protein EUGRSUZ_D00268 [Eucalyptus grandis]
9 Hb_007192_080 0.1094580894 - - PREDICTED: probable serine/threonine-protein kinase WNK3 isoform X2 [Jatropha curcas]
10 Hb_008643_100 0.1104293895 - - PREDICTED: uncharacterized protein LOC105629528 [Jatropha curcas]
11 Hb_001344_010 0.1108092025 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]
12 Hb_001675_180 0.1121289038 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
13 Hb_000261_350 0.1129449988 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
14 Hb_001258_040 0.116475779 - - hypothetical protein JCGZ_12578 [Jatropha curcas]
15 Hb_027450_010 0.120107355 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
16 Hb_000631_080 0.1223055103 transcription factor TF Family: C2H2 PREDICTED: dnaJ homolog subfamily C member 21 [Jatropha curcas]
17 Hb_000244_160 0.122574695 - - PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like [Jatropha curcas]
18 Hb_003195_060 0.1233682942 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
19 Hb_011673_030 0.1242718821 - - hypothetical protein JCGZ_22219 [Jatropha curcas]
20 Hb_010436_020 0.1263410286 - - Dicer-like protein 4 [Morus notabilis]

Gene co-expression network

sample Hb_001623_510 Hb_001623_510 Hb_005489_110 Hb_005489_110 Hb_001623_510--Hb_005489_110 Hb_000014_150 Hb_000014_150 Hb_001623_510--Hb_000014_150 Hb_001019_060 Hb_001019_060 Hb_001623_510--Hb_001019_060 Hb_007426_030 Hb_007426_030 Hb_001623_510--Hb_007426_030 Hb_001266_080 Hb_001266_080 Hb_001623_510--Hb_001266_080 Hb_034271_030 Hb_034271_030 Hb_001623_510--Hb_034271_030 Hb_003195_070 Hb_003195_070 Hb_005489_110--Hb_003195_070 Hb_005489_110--Hb_007426_030 Hb_004109_090 Hb_004109_090 Hb_005489_110--Hb_004109_090 Hb_009048_040 Hb_009048_040 Hb_005489_110--Hb_009048_040 Hb_001975_140 Hb_001975_140 Hb_005489_110--Hb_001975_140 Hb_007192_080 Hb_007192_080 Hb_000014_150--Hb_007192_080 Hb_001866_110 Hb_001866_110 Hb_000014_150--Hb_001866_110 Hb_000608_030 Hb_000608_030 Hb_000014_150--Hb_000608_030 Hb_004117_130 Hb_004117_130 Hb_000014_150--Hb_004117_130 Hb_000384_090 Hb_000384_090 Hb_000014_150--Hb_000384_090 Hb_001019_060--Hb_007426_030 Hb_000103_180 Hb_000103_180 Hb_001019_060--Hb_000103_180 Hb_000538_200 Hb_000538_200 Hb_001019_060--Hb_000538_200 Hb_002079_010 Hb_002079_010 Hb_001019_060--Hb_002079_010 Hb_001019_060--Hb_005489_110 Hb_000808_230 Hb_000808_230 Hb_001019_060--Hb_000808_230 Hb_007426_030--Hb_000103_180 Hb_007426_030--Hb_000808_230 Hb_000483_200 Hb_000483_200 Hb_007426_030--Hb_000483_200 Hb_007426_030--Hb_002079_010 Hb_006400_060 Hb_006400_060 Hb_007426_030--Hb_006400_060 Hb_071736_010 Hb_071736_010 Hb_001266_080--Hb_071736_010 Hb_001124_080 Hb_001124_080 Hb_001266_080--Hb_001124_080 Hb_001266_080--Hb_007426_030 Hb_004055_140 Hb_004055_140 Hb_001266_080--Hb_004055_140 Hb_009117_030 Hb_009117_030 Hb_001266_080--Hb_009117_030 Hb_000914_070 Hb_000914_070 Hb_001266_080--Hb_000914_070 Hb_012490_040 Hb_012490_040 Hb_034271_030--Hb_012490_040 Hb_027450_010 Hb_027450_010 Hb_034271_030--Hb_027450_010 Hb_010436_020 Hb_010436_020 Hb_034271_030--Hb_010436_020 Hb_000244_160 Hb_000244_160 Hb_034271_030--Hb_000244_160 Hb_001226_020 Hb_001226_020 Hb_034271_030--Hb_001226_020 Hb_000723_260 Hb_000723_260 Hb_034271_030--Hb_000723_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.659184 0.526597 0.280806 0.715461 1.35473 2.3354
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.18633 0.956677 1.80042 0.688811 1.17371

CAGE analysis