Hb_001623_520

Information

Type -
Description -
Location Contig1623: 401161-402010
Sequence    

Annotation

kegg
ID rcu:RCOM_1024310
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012077639.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
swissprot
ID Q9CAA8
description Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
trembl
ID A0A067KAU9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12895 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_520 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
2 Hb_084391_010 0.2418154723 - - xylulose kinase, putative [Ricinus communis]
3 Hb_004699_020 0.2759613478 - - PREDICTED: uncharacterized protein LOC103410170 [Malus domestica]
4 Hb_000951_040 0.3122790377 transcription factor TF Family: M-type hypothetical protein JCGZ_09931 [Jatropha curcas]
5 Hb_019520_010 0.3134067643 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
6 Hb_003972_020 0.3191636856 - - conserved hypothetical protein [Ricinus communis]
7 Hb_011360_020 0.3199765197 - - -
8 Hb_173866_010 0.3340782961 - - -
9 Hb_128558_010 0.3345729292 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
10 Hb_010710_050 0.3491947873 - - -
11 Hb_153461_010 0.3626330633 - - PREDICTED: uncharacterized protein LOC105640954 [Jatropha curcas]
12 Hb_010626_020 0.3631549457 - - -
13 Hb_002027_340 0.3638466282 - - -
14 Hb_000903_030 0.3662389642 - - -
15 Hb_000544_140 0.369069834 - - PREDICTED: uncharacterized protein LOC101245866 [Solanum lycopersicum]
16 Hb_001650_010 0.3692097314 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
17 Hb_000370_010 0.3816175082 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
18 Hb_140572_010 0.3898229933 - - PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Jatropha curcas]
19 Hb_115053_010 0.3917950659 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
20 Hb_000103_050 0.3924630298 - - hypothetical protein CICLE_v10006287mg [Citrus clementina]

Gene co-expression network

sample Hb_001623_520 Hb_001623_520 Hb_084391_010 Hb_084391_010 Hb_001623_520--Hb_084391_010 Hb_004699_020 Hb_004699_020 Hb_001623_520--Hb_004699_020 Hb_000951_040 Hb_000951_040 Hb_001623_520--Hb_000951_040 Hb_019520_010 Hb_019520_010 Hb_001623_520--Hb_019520_010 Hb_003972_020 Hb_003972_020 Hb_001623_520--Hb_003972_020 Hb_011360_020 Hb_011360_020 Hb_001623_520--Hb_011360_020 Hb_084391_010--Hb_011360_020 Hb_084391_010--Hb_004699_020 Hb_084391_010--Hb_003972_020 Hb_000103_050 Hb_000103_050 Hb_084391_010--Hb_000103_050 Hb_008516_020 Hb_008516_020 Hb_084391_010--Hb_008516_020 Hb_004699_020--Hb_011360_020 Hb_007757_140 Hb_007757_140 Hb_004699_020--Hb_007757_140 Hb_128558_010 Hb_128558_010 Hb_004699_020--Hb_128558_010 Hb_004699_020--Hb_000951_040 Hb_007753_010 Hb_007753_010 Hb_000951_040--Hb_007753_010 Hb_000421_190 Hb_000421_190 Hb_000951_040--Hb_000421_190 Hb_004871_050 Hb_004871_050 Hb_000951_040--Hb_004871_050 Hb_001396_230 Hb_001396_230 Hb_000951_040--Hb_001396_230 Hb_000951_040--Hb_008516_020 Hb_001153_220 Hb_001153_220 Hb_000951_040--Hb_001153_220 Hb_153461_010 Hb_153461_010 Hb_019520_010--Hb_153461_010 Hb_000903_030 Hb_000903_030 Hb_019520_010--Hb_000903_030 Hb_019520_010--Hb_003972_020 Hb_019520_010--Hb_084391_010 Hb_005914_240 Hb_005914_240 Hb_019520_010--Hb_005914_240 Hb_023813_010 Hb_023813_010 Hb_003972_020--Hb_023813_010 Hb_009722_020 Hb_009722_020 Hb_003972_020--Hb_009722_020 Hb_000092_210 Hb_000092_210 Hb_003972_020--Hb_000092_210 Hb_007426_240 Hb_007426_240 Hb_003972_020--Hb_007426_240 Hb_008202_030 Hb_008202_030 Hb_003972_020--Hb_008202_030 Hb_011360_020--Hb_000103_050 Hb_000756_020 Hb_000756_020 Hb_011360_020--Hb_000756_020 Hb_163268_010 Hb_163268_010 Hb_011360_020--Hb_163268_010 Hb_001741_130 Hb_001741_130 Hb_011360_020--Hb_001741_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0333794 0 0.0368324 0.0370774 0.527129
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.215642 0.507639 0 0

CAGE analysis