Hb_001623_550

Information

Type -
Description -
Location Contig1623: 418664-419785
Sequence    

Annotation

kegg
ID rcu:RCOM_1032260
description Caldesmon, putative
nr
ID XP_012077637.1
description PREDICTED: surfeit locus protein 6 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KNG0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12893 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14738: 417942-419720
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_550 0.0 - - PREDICTED: surfeit locus protein 6 [Jatropha curcas]
2 Hb_001009_050 0.0760147344 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
3 Hb_018663_020 0.078251479 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
4 Hb_002169_010 0.0817558934 - - PREDICTED: la-related protein 6B [Jatropha curcas]
5 Hb_000186_280 0.0868680091 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
6 Hb_011496_010 0.0880279089 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
7 Hb_001969_040 0.0882142047 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
8 Hb_000035_400 0.0904900086 - - PREDICTED: lariat debranching enzyme-like [Citrus sinensis]
9 Hb_000805_310 0.0920313505 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Jatropha curcas]
10 Hb_000270_450 0.093882361 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
11 Hb_000462_150 0.0955616589 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
12 Hb_153547_010 0.0964589206 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
13 Hb_054380_010 0.0964854121 - - -
14 Hb_000230_370 0.09655744 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
15 Hb_010866_040 0.0969901095 - - PREDICTED: metal transporter Nramp2-like [Jatropha curcas]
16 Hb_005144_040 0.0976416338 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
17 Hb_005147_110 0.1001046858 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
18 Hb_000318_140 0.1004969986 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
19 Hb_004724_360 0.1006797335 - - OTU-like cysteine protease family protein [Populus trichocarpa]
20 Hb_001975_070 0.1010998585 - - eukaryotic translation elongation factor 1B alpha-subunit [Hevea brasiliensis]

Gene co-expression network

sample Hb_001623_550 Hb_001623_550 Hb_001009_050 Hb_001009_050 Hb_001623_550--Hb_001009_050 Hb_018663_020 Hb_018663_020 Hb_001623_550--Hb_018663_020 Hb_002169_010 Hb_002169_010 Hb_001623_550--Hb_002169_010 Hb_000186_280 Hb_000186_280 Hb_001623_550--Hb_000186_280 Hb_011496_010 Hb_011496_010 Hb_001623_550--Hb_011496_010 Hb_001969_040 Hb_001969_040 Hb_001623_550--Hb_001969_040 Hb_001009_050--Hb_018663_020 Hb_000270_450 Hb_000270_450 Hb_001009_050--Hb_000270_450 Hb_001975_070 Hb_001975_070 Hb_001009_050--Hb_001975_070 Hb_025048_040 Hb_025048_040 Hb_001009_050--Hb_025048_040 Hb_009615_110 Hb_009615_110 Hb_001009_050--Hb_009615_110 Hb_005914_230 Hb_005914_230 Hb_018663_020--Hb_005914_230 Hb_003384_030 Hb_003384_030 Hb_018663_020--Hb_003384_030 Hb_001226_180 Hb_001226_180 Hb_018663_020--Hb_001226_180 Hb_018663_020--Hb_001969_040 Hb_000318_140 Hb_000318_140 Hb_018663_020--Hb_000318_140 Hb_029281_010 Hb_029281_010 Hb_002169_010--Hb_029281_010 Hb_002169_010--Hb_011496_010 Hb_160818_010 Hb_160818_010 Hb_002169_010--Hb_160818_010 Hb_000462_150 Hb_000462_150 Hb_002169_010--Hb_000462_150 Hb_002377_050 Hb_002377_050 Hb_002169_010--Hb_002377_050 Hb_002818_040 Hb_002818_040 Hb_002169_010--Hb_002818_040 Hb_000684_420 Hb_000684_420 Hb_000186_280--Hb_000684_420 Hb_000186_280--Hb_001969_040 Hb_002400_180 Hb_002400_180 Hb_000186_280--Hb_002400_180 Hb_000076_080 Hb_000076_080 Hb_000186_280--Hb_000076_080 Hb_000645_150 Hb_000645_150 Hb_000186_280--Hb_000645_150 Hb_012305_070 Hb_012305_070 Hb_000186_280--Hb_012305_070 Hb_011496_010--Hb_029281_010 Hb_011496_010--Hb_000462_150 Hb_011496_010--Hb_002818_040 Hb_003638_140 Hb_003638_140 Hb_011496_010--Hb_003638_140 Hb_001936_050 Hb_001936_050 Hb_011496_010--Hb_001936_050 Hb_001969_040--Hb_000462_150 Hb_001969_040--Hb_003384_030 Hb_004324_280 Hb_004324_280 Hb_001969_040--Hb_004324_280 Hb_001969_040--Hb_002818_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
265.874 68.7311 20.6936 21.4659 163.635 249.928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
102.061 77.199 71.7075 63.819 25.7507

CAGE analysis