Hb_001623_560

Information

Type -
Description -
Location Contig1623: 420880-421605
Sequence    

Annotation

kegg
ID pop:POPTR_0010s07470g
description POPTRDRAFT_565838; AWPM-19-like membrane family protein
nr
ID ADQ91848.1
description late embryogenesis abundant protein group 9 protein [Arachis hypogaea]
swissprot
ID -
description -
trembl
ID E5FHZ7
description Late embryogenesis abundant protein group 9 protein OS=Arachis hypogaea GN=LEA9-1 PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14740: 420859-421696
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_560 0.0 - - late embryogenesis abundant protein group 9 protein [Arachis hypogaea]
2 Hb_000666_040 0.0768669536 - - PREDICTED: MLP-like protein 34 [Vitis vinifera]
3 Hb_016734_110 0.0868546591 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
4 Hb_001775_140 0.0899566738 - - Phytosulfokine 3 precursor, putative isoform 2 [Theobroma cacao]
5 Hb_009662_040 0.0902388546 - - PREDICTED: uncharacterized protein LOC105114791 [Populus euphratica]
6 Hb_000742_040 0.0904421109 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
7 Hb_002999_020 0.0933425733 - - PREDICTED: ribonuclease 3-like [Jatropha curcas]
8 Hb_000796_110 0.0956268202 - - PREDICTED: probable pectinesterase 53 [Populus euphratica]
9 Hb_002809_040 0.100713303 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000934_120 0.102397111 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
11 Hb_124677_070 0.107094984 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
12 Hb_005666_010 0.1101163997 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]
13 Hb_001416_120 0.1116743514 - - caspase, putative [Ricinus communis]
14 Hb_153258_030 0.1140617491 - - hypothetical protein RCOM_0853150 [Ricinus communis]
15 Hb_009062_020 0.1154193496 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic [Cucumis melo]
16 Hb_001136_080 0.1246696211 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
17 Hb_007317_050 0.1253750757 - - hypothetical protein POPTR_0009s16550g [Populus trichocarpa]
18 Hb_016911_010 0.1254755254 - - hypothetical protein POPTR_0010s15010g [Populus trichocarpa]
19 Hb_000815_010 0.1261286497 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105117338 [Populus euphratica]
20 Hb_026196_020 0.1270432375 - - transferase, transferring glycosyl groups, putative [Ricinus communis]

Gene co-expression network

sample Hb_001623_560 Hb_001623_560 Hb_000666_040 Hb_000666_040 Hb_001623_560--Hb_000666_040 Hb_016734_110 Hb_016734_110 Hb_001623_560--Hb_016734_110 Hb_001775_140 Hb_001775_140 Hb_001623_560--Hb_001775_140 Hb_009662_040 Hb_009662_040 Hb_001623_560--Hb_009662_040 Hb_000742_040 Hb_000742_040 Hb_001623_560--Hb_000742_040 Hb_002999_020 Hb_002999_020 Hb_001623_560--Hb_002999_020 Hb_000666_040--Hb_009662_040 Hb_000666_040--Hb_016734_110 Hb_007317_050 Hb_007317_050 Hb_000666_040--Hb_007317_050 Hb_000666_040--Hb_002999_020 Hb_000666_040--Hb_001775_140 Hb_016734_110--Hb_002999_020 Hb_001568_040 Hb_001568_040 Hb_016734_110--Hb_001568_040 Hb_016734_110--Hb_000742_040 Hb_153258_030 Hb_153258_030 Hb_016734_110--Hb_153258_030 Hb_001496_150 Hb_001496_150 Hb_016734_110--Hb_001496_150 Hb_000934_120 Hb_000934_120 Hb_001775_140--Hb_000934_120 Hb_016911_010 Hb_016911_010 Hb_001775_140--Hb_016911_010 Hb_009062_020 Hb_009062_020 Hb_001775_140--Hb_009062_020 Hb_001775_140--Hb_016734_110 Hb_001136_080 Hb_001136_080 Hb_001775_140--Hb_001136_080 Hb_009662_040--Hb_002999_020 Hb_009662_040--Hb_153258_030 Hb_009662_040--Hb_016734_110 Hb_009662_040--Hb_000742_040 Hb_124677_070 Hb_124677_070 Hb_000742_040--Hb_124677_070 Hb_000742_040--Hb_002999_020 Hb_000796_110 Hb_000796_110 Hb_000742_040--Hb_000796_110 Hb_000742_040--Hb_153258_030 Hb_000802_040 Hb_000802_040 Hb_000742_040--Hb_000802_040 Hb_002999_020--Hb_153258_030 Hb_002999_020--Hb_000796_110 Hb_001416_120 Hb_001416_120 Hb_002999_020--Hb_001416_120 Hb_002999_020--Hb_124677_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.289952 5.32539 14.6289 0 0.172754
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.07041

CAGE analysis