Hb_001624_040

Information

Type -
Description -
Location Contig1624: 63816-86268
Sequence    

Annotation

kegg
ID rcu:RCOM_0265980
description Ubiquitin carboxyl-terminal hydrolase, putative (EC:3.1.2.15)
nr
ID XP_012092503.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Jatropha curcas]
swissprot
ID O22207
description Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana GN=UBP5 PE=1 SV=2
trembl
ID A0A067JMD6
description Ubiquitin carboxyl-terminal hydrolase OS=Jatropha curcas GN=JCGZ_03783 PE=3 SV=1
Gene Ontology
ID GO:0005634
description ubiquitin carboxyl-terminal hydrolase 5 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14745: 63834-75834 , PASA_asmbl_14747: 86176-86364
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001624_040 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Jatropha curcas]
2 Hb_011609_010 0.103048077 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
3 Hb_002301_210 0.1044593796 - - PREDICTED: receptor-like protein kinase At5g59670 isoform X2 [Jatropha curcas]
4 Hb_000453_230 0.1104092802 - - PREDICTED: NO-associated protein 1, chloroplastic/mitochondrial [Jatropha curcas]
5 Hb_004116_160 0.1130714893 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
6 Hb_000418_090 0.1133309654 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_000803_090 0.1139282255 - - PREDICTED: transcription initiation factor IIB isoform X1 [Jatropha curcas]
8 Hb_030131_020 0.1147789001 - - Carboxypeptidase B2 precursor, putative [Ricinus communis]
9 Hb_001250_040 0.1149057416 - - hypothetical protein CISIN_1g018444mg [Citrus sinensis]
10 Hb_027380_210 0.119936971 - - PREDICTED: uncharacterized protein LOC105634030 [Jatropha curcas]
11 Hb_054865_020 0.1207334849 transcription factor TF Family: HB homeobox leucine zipper family protein [Populus trichocarpa]
12 Hb_000313_290 0.1220553279 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_002249_040 0.1259260639 transcription factor TF Family: bHLH PREDICTED: transcription factor ICE1-like [Jatropha curcas]
14 Hb_161549_010 0.130020508 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001663_130 0.1307422574 - - acyl-CoA thioesterase, putative [Ricinus communis]
16 Hb_003683_030 0.1312757524 - - PREDICTED: uridine-cytidine kinase C isoform X1 [Jatropha curcas]
17 Hb_002447_050 0.132435545 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_007594_080 0.134701529 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
19 Hb_001689_050 0.1357368332 - - PREDICTED: cytochrome P450 CYP749A22-like [Prunus mume]
20 Hb_001396_020 0.1364582329 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]

Gene co-expression network

sample Hb_001624_040 Hb_001624_040 Hb_011609_010 Hb_011609_010 Hb_001624_040--Hb_011609_010 Hb_002301_210 Hb_002301_210 Hb_001624_040--Hb_002301_210 Hb_000453_230 Hb_000453_230 Hb_001624_040--Hb_000453_230 Hb_004116_160 Hb_004116_160 Hb_001624_040--Hb_004116_160 Hb_000418_090 Hb_000418_090 Hb_001624_040--Hb_000418_090 Hb_000803_090 Hb_000803_090 Hb_001624_040--Hb_000803_090 Hb_011609_010--Hb_000803_090 Hb_000008_390 Hb_000008_390 Hb_011609_010--Hb_000008_390 Hb_001621_110 Hb_001621_110 Hb_011609_010--Hb_001621_110 Hb_000062_360 Hb_000062_360 Hb_011609_010--Hb_000062_360 Hb_003529_180 Hb_003529_180 Hb_011609_010--Hb_003529_180 Hb_001250_040 Hb_001250_040 Hb_002301_210--Hb_001250_040 Hb_002301_210--Hb_000803_090 Hb_001689_050 Hb_001689_050 Hb_002301_210--Hb_001689_050 Hb_000076_090 Hb_000076_090 Hb_002301_210--Hb_000076_090 Hb_003894_060 Hb_003894_060 Hb_002301_210--Hb_003894_060 Hb_004837_020 Hb_004837_020 Hb_000453_230--Hb_004837_020 Hb_027380_210 Hb_027380_210 Hb_000453_230--Hb_027380_210 Hb_002447_050 Hb_002447_050 Hb_000453_230--Hb_002447_050 Hb_000665_150 Hb_000665_150 Hb_000453_230--Hb_000665_150 Hb_161549_010 Hb_161549_010 Hb_000453_230--Hb_161549_010 Hb_000836_540 Hb_000836_540 Hb_000453_230--Hb_000836_540 Hb_054865_020 Hb_054865_020 Hb_004116_160--Hb_054865_020 Hb_001396_020 Hb_001396_020 Hb_004116_160--Hb_001396_020 Hb_000098_240 Hb_000098_240 Hb_004116_160--Hb_000098_240 Hb_001279_020 Hb_001279_020 Hb_004116_160--Hb_001279_020 Hb_000529_130 Hb_000529_130 Hb_004116_160--Hb_000529_130 Hb_000313_290 Hb_000313_290 Hb_000418_090--Hb_000313_290 Hb_000331_340 Hb_000331_340 Hb_000418_090--Hb_000331_340 Hb_000418_090--Hb_000453_230 Hb_000010_130 Hb_000010_130 Hb_000418_090--Hb_000010_130 Hb_000418_090--Hb_001250_040 Hb_003747_050 Hb_003747_050 Hb_000803_090--Hb_003747_050 Hb_000803_090--Hb_000008_390 Hb_000631_090 Hb_000631_090 Hb_000803_090--Hb_000631_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.16111 5.95842 15.2929 3.6488 3.95812 3.54023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.786423 0.733458 1.27143 2.90461 7.43279

CAGE analysis