Hb_001628_030

Information

Type -
Description -
Location Contig1628: 19417-23801
Sequence    

Annotation

kegg
ID pxb:103959964
description probable receptor-like protein kinase At1g67000
nr
ID XP_012066212.1
description PREDICTED: uncharacterized protein LOC105629266 isoform X1 [Jatropha curcas]
swissprot
ID C0LGH3
description Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=2 SV=2
trembl
ID A0A061G2R2
description Kinase, putative OS=Theobroma cacao GN=TCM_015372 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14767: 19209-19704 , PASA_asmbl_14768: 19834-22792 , PASA_asmbl_14769: 22845-23556
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001628_030 0.0 - - PREDICTED: uncharacterized protein LOC105629266 isoform X1 [Jatropha curcas]
2 Hb_041145_010 0.1324640352 - - hypothetical protein CISIN_1g021653mg [Citrus sinensis]
3 Hb_032050_070 0.1411762652 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
4 Hb_036356_010 0.1436185547 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
5 Hb_002049_030 0.1447932934 - - PREDICTED: uncharacterized protein LOC105635940 isoform X3 [Jatropha curcas]
6 Hb_133845_010 0.1470305931 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
7 Hb_138705_010 0.1498675299 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
8 Hb_001019_140 0.1566659809 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_003216_020 0.1580941081 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]
10 Hb_000991_110 0.1606109335 - - PREDICTED: uncharacterized protein LOC105636336 [Jatropha curcas]
11 Hb_127400_010 0.1663175542 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
12 Hb_009510_050 0.1684124934 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001628_020 0.1739364554 - - receptor serine/threonine kinase, putative [Ricinus communis]
14 Hb_000110_330 0.1748294094 - - PREDICTED: probable nitrite transporter At1g68570-like [Glycine max]
15 Hb_003864_020 0.1774983728 - - kinase, putative [Ricinus communis]
16 Hb_001897_030 0.1776254551 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
17 Hb_000108_040 0.1783274245 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Gossypium raimondii]
18 Hb_010573_040 0.1797717357 - - PREDICTED: zinc-metallopeptidase, peroxisomal isoform X2 [Populus euphratica]
19 Hb_003602_090 0.1802265848 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
20 Hb_000110_030 0.1805186478 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001628_030 Hb_001628_030 Hb_041145_010 Hb_041145_010 Hb_001628_030--Hb_041145_010 Hb_032050_070 Hb_032050_070 Hb_001628_030--Hb_032050_070 Hb_036356_010 Hb_036356_010 Hb_001628_030--Hb_036356_010 Hb_002049_030 Hb_002049_030 Hb_001628_030--Hb_002049_030 Hb_133845_010 Hb_133845_010 Hb_001628_030--Hb_133845_010 Hb_138705_010 Hb_138705_010 Hb_001628_030--Hb_138705_010 Hb_000110_330 Hb_000110_330 Hb_041145_010--Hb_000110_330 Hb_117127_010 Hb_117127_010 Hb_041145_010--Hb_117127_010 Hb_001568_120 Hb_001568_120 Hb_041145_010--Hb_001568_120 Hb_041145_010--Hb_133845_010 Hb_003602_090 Hb_003602_090 Hb_041145_010--Hb_003602_090 Hb_127400_010 Hb_127400_010 Hb_041145_010--Hb_127400_010 Hb_003216_020 Hb_003216_020 Hb_032050_070--Hb_003216_020 Hb_019040_010 Hb_019040_010 Hb_032050_070--Hb_019040_010 Hb_032050_070--Hb_003602_090 Hb_009510_050 Hb_009510_050 Hb_032050_070--Hb_009510_050 Hb_000723_060 Hb_000723_060 Hb_032050_070--Hb_000723_060 Hb_010614_020 Hb_010614_020 Hb_036356_010--Hb_010614_020 Hb_007403_010 Hb_007403_010 Hb_036356_010--Hb_007403_010 Hb_002044_110 Hb_002044_110 Hb_036356_010--Hb_002044_110 Hb_010573_040 Hb_010573_040 Hb_036356_010--Hb_010573_040 Hb_004635_040 Hb_004635_040 Hb_036356_010--Hb_004635_040 Hb_008959_050 Hb_008959_050 Hb_036356_010--Hb_008959_050 Hb_002049_030--Hb_138705_010 Hb_001019_140 Hb_001019_140 Hb_002049_030--Hb_001019_140 Hb_000509_040 Hb_000509_040 Hb_002049_030--Hb_000509_040 Hb_000991_110 Hb_000991_110 Hb_002049_030--Hb_000991_110 Hb_048937_010 Hb_048937_010 Hb_002049_030--Hb_048937_010 Hb_145268_010 Hb_145268_010 Hb_002049_030--Hb_145268_010 Hb_018043_010 Hb_018043_010 Hb_133845_010--Hb_018043_010 Hb_133845_010--Hb_000110_330 Hb_007407_010 Hb_007407_010 Hb_133845_010--Hb_007407_010 Hb_012404_050 Hb_012404_050 Hb_133845_010--Hb_012404_050 Hb_000133_060 Hb_000133_060 Hb_133845_010--Hb_000133_060 Hb_138705_010--Hb_001019_140 Hb_000996_100 Hb_000996_100 Hb_138705_010--Hb_000996_100 Hb_003968_010 Hb_003968_010 Hb_138705_010--Hb_003968_010 Hb_004096_140 Hb_004096_140 Hb_138705_010--Hb_004096_140 Hb_138705_010--Hb_048937_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.201589 5.61729 2.44581 3.48823 0 0.165029
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0216901 0.0170666 0 1.59508 0

CAGE analysis