Hb_001628_040

Information

Type -
Description -
Location Contig1628: 42117-46501
Sequence    

Annotation

kegg
ID pop:POPTR_0004s18070g
description POPTRDRAFT_856184; glycosyl hydrolase family 35 family protein
nr
ID XP_011046271.1
description PREDICTED: beta-galactosidase 13-like [Populus euphratica]
swissprot
ID Q9SCU9
description Beta-galactosidase 13 OS=Arabidopsis thaliana GN=BGAL13 PE=2 SV=1
trembl
ID B9H197
description Beta-galactosidase OS=Populus trichocarpa GN=POPTR_0004s18070g PE=3 SV=1
Gene Ontology
ID GO:0004553
description beta-galactosidase 13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001628_040 0.0 - - PREDICTED: beta-galactosidase 13-like [Populus euphratica]
2 Hb_118941_010 0.110135094 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
3 Hb_000027_020 0.1120059541 - - Nonspecific lipid-transfer protein, putative [Ricinus communis]
4 Hb_001277_390 0.1152051978 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
5 Hb_001247_050 0.1187910808 - - PREDICTED: WAT1-related protein At1g09380 [Jatropha curcas]
6 Hb_007210_010 0.1206827329 - - -
7 Hb_008535_020 0.1220079232 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
8 Hb_005408_110 0.1230474047 - - purine permease, putative [Ricinus communis]
9 Hb_031822_020 0.1257652768 - - PREDICTED: uncharacterized protein LOC104613080 [Nelumbo nucifera]
10 Hb_000224_070 0.1258174657 - - -
11 Hb_001634_070 0.1274735798 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000203_130 0.127635441 - - -
13 Hb_000645_040 0.1278540466 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
14 Hb_000103_210 0.127885214 - - PREDICTED: protein lin-12-like isoform X1 [Populus euphratica]
15 Hb_001817_050 0.127940136 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
16 Hb_002235_340 0.1281928796 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
17 Hb_001322_200 0.1283149324 - - conserved hypothetical protein [Ricinus communis]
18 Hb_120496_010 0.1283641422 - - PREDICTED: CSC1-like protein At1g32090 [Cicer arietinum]
19 Hb_153199_010 0.1300752795 - - -
20 Hb_002105_070 0.1324094464 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001628_040 Hb_001628_040 Hb_118941_010 Hb_118941_010 Hb_001628_040--Hb_118941_010 Hb_000027_020 Hb_000027_020 Hb_001628_040--Hb_000027_020 Hb_001277_390 Hb_001277_390 Hb_001628_040--Hb_001277_390 Hb_001247_050 Hb_001247_050 Hb_001628_040--Hb_001247_050 Hb_007210_010 Hb_007210_010 Hb_001628_040--Hb_007210_010 Hb_008535_020 Hb_008535_020 Hb_001628_040--Hb_008535_020 Hb_118941_010--Hb_001277_390 Hb_000224_070 Hb_000224_070 Hb_118941_010--Hb_000224_070 Hb_118941_010--Hb_000027_020 Hb_153199_010 Hb_153199_010 Hb_118941_010--Hb_153199_010 Hb_007432_040 Hb_007432_040 Hb_118941_010--Hb_007432_040 Hb_004032_170 Hb_004032_170 Hb_118941_010--Hb_004032_170 Hb_005699_100 Hb_005699_100 Hb_000027_020--Hb_005699_100 Hb_000645_040 Hb_000645_040 Hb_000027_020--Hb_000645_040 Hb_002105_070 Hb_002105_070 Hb_000027_020--Hb_002105_070 Hb_001634_070 Hb_001634_070 Hb_000027_020--Hb_001634_070 Hb_001322_200 Hb_001322_200 Hb_000027_020--Hb_001322_200 Hb_001277_390--Hb_000224_070 Hb_120496_010 Hb_120496_010 Hb_001277_390--Hb_120496_010 Hb_001591_020 Hb_001591_020 Hb_001277_390--Hb_001591_020 Hb_000733_170 Hb_000733_170 Hb_001277_390--Hb_000733_170 Hb_001892_040 Hb_001892_040 Hb_001277_390--Hb_001892_040 Hb_001247_050--Hb_008535_020 Hb_001247_050--Hb_001277_390 Hb_001247_050--Hb_000224_070 Hb_001247_050--Hb_118941_010 Hb_001247_050--Hb_120496_010 Hb_069237_010 Hb_069237_010 Hb_001247_050--Hb_069237_010 Hb_003092_010 Hb_003092_010 Hb_007210_010--Hb_003092_010 Hb_007210_010--Hb_001322_200 Hb_000103_210 Hb_000103_210 Hb_007210_010--Hb_000103_210 Hb_000203_130 Hb_000203_130 Hb_007210_010--Hb_000203_130 Hb_007210_010--Hb_000645_040 Hb_008535_020--Hb_001277_390 Hb_008535_020--Hb_118941_010 Hb_008535_020--Hb_000224_070 Hb_002701_200 Hb_002701_200 Hb_008535_020--Hb_002701_200 Hb_005976_030 Hb_005976_030 Hb_008535_020--Hb_005976_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00642561 0.00608564 0.605996 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0139272 0 0 0

CAGE analysis