Hb_001628_120

Information

Type -
Description -
Location Contig1628: 236926-243050
Sequence    

Annotation

kegg
ID rcu:RCOM_0491260
description L-ascorbate peroxidase 1, cytosolic, putative (EC:1.11.1.11)
nr
ID AIU34462.1
description putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
swissprot
ID Q42564
description L-ascorbate peroxidase 3, peroxisomal OS=Arabidopsis thaliana GN=APX3 PE=1 SV=1
trembl
ID A0A097NU85
description Putative ascorbate peroxidase (Fragment) OS=Taraxacum brevicorniculatum GN=APX PE=2 SV=1
Gene Ontology
ID GO:0004601
description ascorbate peroxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14775: 236895-243046 , PASA_asmbl_14777: 238157-239137
cDNA
(Sanger)
(ID:Location)		 007_A05.ab1: 236895-241847 , 023_E12.ab1: 236895-237815 , 039_F12.ab1: 236895-241651 , 053_A05.ab1: 236923-241674

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001628_120 0.0 - - putative ascorbate peroxidase, partial [Taraxacum brevicorniculatum]
2 Hb_001976_030 0.0792784707 - - PREDICTED: protein NETWORKED 2D-like isoform X2 [Jatropha curcas]
3 Hb_000684_390 0.0847097709 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
4 Hb_042083_040 0.0871008195 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000049_180 0.0871427482 - - aromatic amino acid decarboxylase, putative [Ricinus communis]
6 Hb_007441_310 0.0884140342 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
7 Hb_000397_150 0.0911428273 - - PREDICTED: probable flavin-containing monooxygenase 1 [Jatropha curcas]
8 Hb_032631_070 0.0911460588 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
9 Hb_121089_040 0.0950729406 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
10 Hb_005228_040 0.1033893358 - - PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
11 Hb_000920_310 0.1053011035 - - Ran GTPase binding protein, putative [Ricinus communis]
12 Hb_000107_590 0.1061931624 - - PREDICTED: tricalbin-3 [Jatropha curcas]
13 Hb_000834_080 0.1064273803 - - PREDICTED: uncharacterized protein LOC105637718 [Jatropha curcas]
14 Hb_000114_150 0.1066369068 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranylgeranyl-diphosphate synthase [Hevea brasiliensis]
15 Hb_003994_080 0.1099788808 - - PREDICTED: uncharacterized protein LOC105634384 [Jatropha curcas]
16 Hb_000585_110 0.1106389571 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
17 Hb_004306_110 0.1106508016 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
18 Hb_001009_260 0.1115463263 - - PREDICTED: uncharacterized aarF domain-containing protein kinase 1 isoform X1 [Jatropha curcas]
19 Hb_000816_200 0.1115879382 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
20 Hb_026549_070 0.1133491068 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001628_120 Hb_001628_120 Hb_001976_030 Hb_001976_030 Hb_001628_120--Hb_001976_030 Hb_000684_390 Hb_000684_390 Hb_001628_120--Hb_000684_390 Hb_042083_040 Hb_042083_040 Hb_001628_120--Hb_042083_040 Hb_000049_180 Hb_000049_180 Hb_001628_120--Hb_000049_180 Hb_007441_310 Hb_007441_310 Hb_001628_120--Hb_007441_310 Hb_000397_150 Hb_000397_150 Hb_001628_120--Hb_000397_150 Hb_001976_030--Hb_000049_180 Hb_001976_030--Hb_042083_040 Hb_006829_060 Hb_006829_060 Hb_001976_030--Hb_006829_060 Hb_005563_010 Hb_005563_010 Hb_001976_030--Hb_005563_010 Hb_000638_070 Hb_000638_070 Hb_001976_030--Hb_000638_070 Hb_000920_310 Hb_000920_310 Hb_000684_390--Hb_000920_310 Hb_000000_310 Hb_000000_310 Hb_000684_390--Hb_000000_310 Hb_003682_070 Hb_003682_070 Hb_000684_390--Hb_003682_070 Hb_000107_250 Hb_000107_250 Hb_000684_390--Hb_000107_250 Hb_001017_030 Hb_001017_030 Hb_000684_390--Hb_001017_030 Hb_174865_040 Hb_174865_040 Hb_042083_040--Hb_174865_040 Hb_156850_100 Hb_156850_100 Hb_042083_040--Hb_156850_100 Hb_042083_040--Hb_000049_180 Hb_000096_190 Hb_000096_190 Hb_042083_040--Hb_000096_190 Hb_000049_160 Hb_000049_160 Hb_000049_180--Hb_000049_160 Hb_000049_180--Hb_007441_310 Hb_000049_180--Hb_000096_190 Hb_008375_010 Hb_008375_010 Hb_007441_310--Hb_008375_010 Hb_032631_070 Hb_032631_070 Hb_007441_310--Hb_032631_070 Hb_000585_110 Hb_000585_110 Hb_007441_310--Hb_000585_110 Hb_007441_310--Hb_000397_150 Hb_055690_010 Hb_055690_010 Hb_007441_310--Hb_055690_010 Hb_001195_770 Hb_001195_770 Hb_007441_310--Hb_001195_770 Hb_000114_150 Hb_000114_150 Hb_000397_150--Hb_000114_150 Hb_048093_010 Hb_048093_010 Hb_000397_150--Hb_048093_010 Hb_000397_150--Hb_001195_770 Hb_000397_150--Hb_032631_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.4709 29.2488 89.4917 120.556 17.8335 19.9126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.2894 32.5068 37.2728 33.1636 174.574

CAGE analysis