Hb_001629_040

Information

Type -
Description -
Location Contig1629: 39479-40296
Sequence    

Annotation

kegg
ID pop:POPTR_0001s41630g
description hypothetical protein
nr
ID XP_006370321.1
description hypothetical protein POPTR_0001s41630g [Populus trichocarpa]
swissprot
ID G7J032
description Phytohormone-binding protein OS=Medicago truncatula GN=MTR_3g055120 PE=1 SV=1
trembl
ID B9N590
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s41630g PE=4 SV=1
Gene Ontology
ID GO:0006952
description pathogenesis-related protein bet v i family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001629_040 0.0 - - hypothetical protein POPTR_0001s41630g [Populus trichocarpa]
2 Hb_000009_010 0.0380896308 - - PREDICTED: ABC transporter G family member 10-like [Jatropha curcas]
3 Hb_128193_010 0.082018277 - - PREDICTED: uncharacterized protein LOC103699534, partial [Phoenix dactylifera]
4 Hb_031866_030 0.1369405002 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo]
5 Hb_009152_030 0.1431435649 - - hypothetical protein L484_026849 [Morus notabilis]
6 Hb_002060_040 0.1487168938 - - putative polyprotein [Oryza sativa Japonica Group]
7 Hb_033066_030 0.1493643103 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
8 Hb_000789_140 0.2273163455 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
9 Hb_009557_010 0.239072037 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
10 Hb_097006_010 0.2425584184 - - PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]
11 Hb_010164_040 0.2434802077 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_023142_010 0.2462249612 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
13 Hb_000155_240 0.257880604 - - PREDICTED: uncharacterized protein LOC104888642 [Beta vulgaris subsp. vulgaris]
14 Hb_017604_030 0.2604012364 - - -
15 Hb_001878_030 0.2753431135 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105126050 [Populus euphratica]
16 Hb_001102_120 0.2881954452 - - -
17 Hb_012090_020 0.2939319465 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 [Jatropha curcas]
18 Hb_038508_010 0.2940387316 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
19 Hb_003567_020 0.2968169519 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000089_050 0.2991998269 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_001629_040 Hb_001629_040 Hb_000009_010 Hb_000009_010 Hb_001629_040--Hb_000009_010 Hb_128193_010 Hb_128193_010 Hb_001629_040--Hb_128193_010 Hb_031866_030 Hb_031866_030 Hb_001629_040--Hb_031866_030 Hb_009152_030 Hb_009152_030 Hb_001629_040--Hb_009152_030 Hb_002060_040 Hb_002060_040 Hb_001629_040--Hb_002060_040 Hb_033066_030 Hb_033066_030 Hb_001629_040--Hb_033066_030 Hb_000009_010--Hb_031866_030 Hb_000009_010--Hb_002060_040 Hb_000009_010--Hb_033066_030 Hb_000009_010--Hb_128193_010 Hb_000009_010--Hb_009152_030 Hb_009557_010 Hb_009557_010 Hb_128193_010--Hb_009557_010 Hb_023142_010 Hb_023142_010 Hb_128193_010--Hb_023142_010 Hb_128193_010--Hb_031866_030 Hb_128193_010--Hb_009152_030 Hb_031866_030--Hb_002060_040 Hb_031866_030--Hb_033066_030 Hb_031866_030--Hb_009152_030 Hb_000789_140 Hb_000789_140 Hb_031866_030--Hb_000789_140 Hb_009152_030--Hb_002060_040 Hb_009152_030--Hb_033066_030 Hb_009152_030--Hb_000789_140 Hb_002060_040--Hb_033066_030 Hb_002060_040--Hb_000789_140 Hb_033066_030--Hb_000789_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0722721 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.113162 0.241645

CAGE analysis