Hb_001629_120

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1629: 80590-83154
Sequence    

Annotation

kegg
ID pop:POPTR_0019s00390g
description hypothetical protein
nr
ID XP_011029424.1
description PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Populus euphratica]
swissprot
ID O81825
description Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1
trembl
ID U5FGS3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s00390g PE=4 SV=1
Gene Ontology
ID GO:0097159
description probable disease resistance protein at4g27220

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14792: 80313-90770
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001629_120 0.0 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Populus euphratica]
2 Hb_005365_010 0.0508319832 - - PREDICTED: serine carboxypeptidase-like 20 [Jatropha curcas]
3 Hb_000173_270 0.079133649 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
4 Hb_000818_090 0.0835487921 - - glutamate receptor 3 plant, putative [Ricinus communis]
5 Hb_000023_130 0.0857701483 - - Metal-nicotianamine transporter YSL1 [Glycine soja]
6 Hb_000185_170 0.089053074 - - ATP binding protein, putative [Ricinus communis]
7 Hb_001051_010 0.0892451924 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
8 Hb_001417_060 0.0894720005 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
9 Hb_000260_410 0.093085166 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
10 Hb_006478_050 0.0945193298 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
11 Hb_004880_050 0.0964288418 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000627_050 0.0970677537 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
13 Hb_001301_260 0.0979156705 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
14 Hb_044653_050 0.098315647 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
15 Hb_000608_290 0.0983661067 - - thioredoxin f-type, putative [Ricinus communis]
16 Hb_001789_120 0.099574479 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
17 Hb_000941_090 0.1013059374 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
18 Hb_007270_020 0.1021982668 - - hypothetical protein JCGZ_09593 [Jatropha curcas]
19 Hb_070136_010 0.1024663378 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
20 Hb_017491_010 0.1027521241 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001629_120 Hb_001629_120 Hb_005365_010 Hb_005365_010 Hb_001629_120--Hb_005365_010 Hb_000173_270 Hb_000173_270 Hb_001629_120--Hb_000173_270 Hb_000818_090 Hb_000818_090 Hb_001629_120--Hb_000818_090 Hb_000023_130 Hb_000023_130 Hb_001629_120--Hb_000023_130 Hb_000185_170 Hb_000185_170 Hb_001629_120--Hb_000185_170 Hb_001051_010 Hb_001051_010 Hb_001629_120--Hb_001051_010 Hb_005365_010--Hb_000173_270 Hb_005365_010--Hb_000818_090 Hb_007270_020 Hb_007270_020 Hb_005365_010--Hb_007270_020 Hb_001417_060 Hb_001417_060 Hb_005365_010--Hb_001417_060 Hb_044653_050 Hb_044653_050 Hb_005365_010--Hb_044653_050 Hb_000260_410 Hb_000260_410 Hb_000173_270--Hb_000260_410 Hb_006570_060 Hb_006570_060 Hb_000173_270--Hb_006570_060 Hb_000173_270--Hb_044653_050 Hb_000272_030 Hb_000272_030 Hb_000173_270--Hb_000272_030 Hb_001789_120 Hb_001789_120 Hb_000818_090--Hb_001789_120 Hb_013394_120 Hb_013394_120 Hb_000818_090--Hb_013394_120 Hb_009393_090 Hb_009393_090 Hb_000818_090--Hb_009393_090 Hb_004880_050 Hb_004880_050 Hb_000818_090--Hb_004880_050 Hb_001100_070 Hb_001100_070 Hb_000818_090--Hb_001100_070 Hb_000759_040 Hb_000759_040 Hb_000023_130--Hb_000759_040 Hb_000023_130--Hb_001051_010 Hb_132356_010 Hb_132356_010 Hb_000023_130--Hb_132356_010 Hb_009788_020 Hb_009788_020 Hb_000023_130--Hb_009788_020 Hb_000037_200 Hb_000037_200 Hb_000023_130--Hb_000037_200 Hb_070136_010 Hb_070136_010 Hb_000185_170--Hb_070136_010 Hb_000185_170--Hb_000037_200 Hb_002078_320 Hb_002078_320 Hb_000185_170--Hb_002078_320 Hb_000987_020 Hb_000987_020 Hb_000185_170--Hb_000987_020 Hb_000265_170 Hb_000265_170 Hb_000185_170--Hb_000265_170 Hb_000608_290 Hb_000608_290 Hb_001051_010--Hb_000608_290 Hb_018591_020 Hb_018591_020 Hb_001051_010--Hb_018591_020 Hb_000627_050 Hb_000627_050 Hb_001051_010--Hb_000627_050 Hb_002073_150 Hb_002073_150 Hb_001051_010--Hb_002073_150 Hb_000140_460 Hb_000140_460 Hb_001051_010--Hb_000140_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0153181 1.3095 2.98928 2.20646 0.00716844 0.0066946
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0173816 0.0136774 0 0.602814 3.25727

CAGE analysis