Hb_001631_080

Information

Type -
Description -
Location Contig1631: 58382-68112
Sequence    

Annotation

kegg
ID pop:POPTR_0007s06250g
description POPTRDRAFT_562668; hypothetical protein
nr
ID XP_011025650.1
description PREDICTED: importin-5-like [Populus euphratica]
swissprot
ID O00410
description Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4
trembl
ID B9HFV5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s06250g PE=4 SV=1
Gene Ontology
ID GO:0005488
description importin-5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14854: 67282-68164
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001631_080 0.0 - - PREDICTED: importin-5-like [Populus euphratica]
2 Hb_048141_010 0.1123954459 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 2 [Jatropha curcas]
3 Hb_003540_230 0.1213703602 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
4 Hb_005450_010 0.1340853038 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
5 Hb_010578_090 0.141711535 - - HEV2.1 [Hevea brasiliensis]
6 Hb_124315_040 0.1427505827 - - hypothetical protein 19 [Hevea brasiliensis]
7 Hb_001631_070 0.1464522361 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
8 Hb_000184_180 0.1517457123 - - putative C3HC4-type RING zinc finger protein [Hevea brasiliensis]
9 Hb_009805_010 0.151785635 - - transcription factor, putative [Ricinus communis]
10 Hb_001109_120 0.1539298457 - - PREDICTED: acyl-CoA-binding protein-like [Nelumbo nucifera]
11 Hb_000005_030 0.1559196476 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
12 Hb_008847_010 0.158312478 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
13 Hb_004787_090 0.1588259335 - - PREDICTED: HVA22-like protein a [Jatropha curcas]
14 Hb_000206_220 0.160349699 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 9 [Jatropha curcas]
15 Hb_005016_130 0.1614162644 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
16 Hb_029879_080 0.1618099504 - - unknown [Populus trichocarpa]
17 Hb_000284_010 0.1636275895 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
18 Hb_000580_170 0.1641271461 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
19 Hb_003057_130 0.1663066661 - - -
20 Hb_012799_060 0.1712002204 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]

Gene co-expression network

sample Hb_001631_080 Hb_001631_080 Hb_048141_010 Hb_048141_010 Hb_001631_080--Hb_048141_010 Hb_003540_230 Hb_003540_230 Hb_001631_080--Hb_003540_230 Hb_005450_010 Hb_005450_010 Hb_001631_080--Hb_005450_010 Hb_010578_090 Hb_010578_090 Hb_001631_080--Hb_010578_090 Hb_124315_040 Hb_124315_040 Hb_001631_080--Hb_124315_040 Hb_001631_070 Hb_001631_070 Hb_001631_080--Hb_001631_070 Hb_008847_010 Hb_008847_010 Hb_048141_010--Hb_008847_010 Hb_048141_010--Hb_003540_230 Hb_048141_010--Hb_010578_090 Hb_004787_090 Hb_004787_090 Hb_048141_010--Hb_004787_090 Hb_005016_130 Hb_005016_130 Hb_048141_010--Hb_005016_130 Hb_002235_230 Hb_002235_230 Hb_003540_230--Hb_002235_230 Hb_029584_140 Hb_029584_140 Hb_003540_230--Hb_029584_140 Hb_000580_170 Hb_000580_170 Hb_003540_230--Hb_000580_170 Hb_003540_230--Hb_005016_130 Hb_012799_060 Hb_012799_060 Hb_003540_230--Hb_012799_060 Hb_003038_180 Hb_003038_180 Hb_003540_230--Hb_003038_180 Hb_001892_150 Hb_001892_150 Hb_005450_010--Hb_001892_150 Hb_000284_010 Hb_000284_010 Hb_005450_010--Hb_000284_010 Hb_043061_010 Hb_043061_010 Hb_005450_010--Hb_043061_010 Hb_029879_080 Hb_029879_080 Hb_005450_010--Hb_029879_080 Hb_001741_080 Hb_001741_080 Hb_005450_010--Hb_001741_080 Hb_010578_090--Hb_029879_080 Hb_010578_090--Hb_005016_130 Hb_002298_040 Hb_002298_040 Hb_010578_090--Hb_002298_040 Hb_115919_020 Hb_115919_020 Hb_010578_090--Hb_115919_020 Hb_010578_090--Hb_000284_010 Hb_012347_010 Hb_012347_010 Hb_124315_040--Hb_012347_010 Hb_000957_040 Hb_000957_040 Hb_124315_040--Hb_000957_040 Hb_124315_040--Hb_003540_230 Hb_010872_060 Hb_010872_060 Hb_124315_040--Hb_010872_060 Hb_005396_040 Hb_005396_040 Hb_124315_040--Hb_005396_040 Hb_124315_040--Hb_029584_140 Hb_001631_070--Hb_010872_060 Hb_001631_070--Hb_000957_040 Hb_000762_020 Hb_000762_020 Hb_001631_070--Hb_000762_020 Hb_001631_070--Hb_012347_010 Hb_001631_070--Hb_124315_040 Hb_003745_010 Hb_003745_010 Hb_001631_070--Hb_003745_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.81087 0.158271 0.0706736 0.634589 1.97267 4.44687
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1599 3.90167 2.24704 0.192932 0.0272372

CAGE analysis