Hb_001631_100

Information

Type -
Description -
Location Contig1631: 94100-95558
Sequence    

Annotation

kegg
ID rcu:RCOM_0193840
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002532046.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9SV96
description Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidopsis thaliana GN=EMB2453 PE=2 SV=1
trembl
ID B9T1C7
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0193840 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14855: 95487-95712
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001631_100 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000261_410 0.1584711698 - - PREDICTED: myosin-binding protein 3 [Jatropha curcas]
3 Hb_000800_110 0.1731895756 - - NAD dehydrogenase, putative [Ricinus communis]
4 Hb_000575_100 0.1754052638 - - PREDICTED: nephrocystin-3 isoform X2 [Jatropha curcas]
5 Hb_013459_010 0.1768363373 - - PREDICTED: uncharacterized protein LOC101491556 isoform X2 [Cicer arietinum]
6 Hb_011616_020 0.1786040304 - - hypothetical protein CICLE_v10004968mg [Citrus clementina]
7 Hb_003632_030 0.1793934181 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
8 Hb_000940_170 0.1851406363 - - hypothetical protein VITISV_029834 [Vitis vinifera]
9 Hb_005250_030 0.1880949902 - - PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]
10 Hb_002986_060 0.1884110711 - - hypothetical protein M569_15879, partial [Genlisea aurea]
11 Hb_001431_120 0.1897194104 - - PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Jatropha curcas]
12 Hb_000284_120 0.1902907769 - - PREDICTED: uncharacterized protein LOC105629656 [Jatropha curcas]
13 Hb_005892_020 0.1952725027 - - PREDICTED: uncharacterized protein LOC105632170 isoform X1 [Jatropha curcas]
14 Hb_001117_160 0.1956382173 - - PREDICTED: pentatricopeptide repeat-containing protein At1g10270 [Jatropha curcas]
15 Hb_001623_280 0.1959960247 - - PREDICTED: chaperonin CPN60-2, mitochondrial [Jatropha curcas]
16 Hb_000815_170 0.1961467861 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
17 Hb_000025_270 0.1975314818 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
18 Hb_001117_200 0.2003295661 transcription factor TF Family: SWI/SNF-BAF60b conserved hypothetical protein [Ricinus communis]
19 Hb_000062_450 0.2006098593 - - hypothetical protein MTR_081s0009, partial [Medicago truncatula]
20 Hb_007456_040 0.2012268428 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Jatropha curcas]

Gene co-expression network

sample Hb_001631_100 Hb_001631_100 Hb_000261_410 Hb_000261_410 Hb_001631_100--Hb_000261_410 Hb_000800_110 Hb_000800_110 Hb_001631_100--Hb_000800_110 Hb_000575_100 Hb_000575_100 Hb_001631_100--Hb_000575_100 Hb_013459_010 Hb_013459_010 Hb_001631_100--Hb_013459_010 Hb_011616_020 Hb_011616_020 Hb_001631_100--Hb_011616_020 Hb_003632_030 Hb_003632_030 Hb_001631_100--Hb_003632_030 Hb_000082_070 Hb_000082_070 Hb_000261_410--Hb_000082_070 Hb_000347_560 Hb_000347_560 Hb_000261_410--Hb_000347_560 Hb_002631_140 Hb_002631_140 Hb_000261_410--Hb_002631_140 Hb_001381_050 Hb_001381_050 Hb_000261_410--Hb_001381_050 Hb_001789_020 Hb_001789_020 Hb_000261_410--Hb_001789_020 Hb_022250_100 Hb_022250_100 Hb_000261_410--Hb_022250_100 Hb_007120_060 Hb_007120_060 Hb_000800_110--Hb_007120_060 Hb_000035_010 Hb_000035_010 Hb_000800_110--Hb_000035_010 Hb_000022_170 Hb_000022_170 Hb_000800_110--Hb_000022_170 Hb_000022_150 Hb_000022_150 Hb_000800_110--Hb_000022_150 Hb_007123_050 Hb_007123_050 Hb_000800_110--Hb_007123_050 Hb_000950_060 Hb_000950_060 Hb_000800_110--Hb_000950_060 Hb_055062_040 Hb_055062_040 Hb_000575_100--Hb_055062_040 Hb_000849_080 Hb_000849_080 Hb_000575_100--Hb_000849_080 Hb_004306_030 Hb_004306_030 Hb_000575_100--Hb_004306_030 Hb_002025_330 Hb_002025_330 Hb_000575_100--Hb_002025_330 Hb_004048_120 Hb_004048_120 Hb_000575_100--Hb_004048_120 Hb_003280_020 Hb_003280_020 Hb_000575_100--Hb_003280_020 Hb_007545_130 Hb_007545_130 Hb_013459_010--Hb_007545_130 Hb_005250_030 Hb_005250_030 Hb_013459_010--Hb_005250_030 Hb_000925_090 Hb_000925_090 Hb_013459_010--Hb_000925_090 Hb_135572_010 Hb_135572_010 Hb_013459_010--Hb_135572_010 Hb_000714_040 Hb_000714_040 Hb_013459_010--Hb_000714_040 Hb_000815_170 Hb_000815_170 Hb_013459_010--Hb_000815_170 Hb_011616_020--Hb_005250_030 Hb_005523_010 Hb_005523_010 Hb_011616_020--Hb_005523_010 Hb_000062_450 Hb_000062_450 Hb_011616_020--Hb_000062_450 Hb_156279_010 Hb_156279_010 Hb_011616_020--Hb_156279_010 Hb_011616_020--Hb_003632_030 Hb_011616_020--Hb_000815_170 Hb_003632_030--Hb_022250_100 Hb_006846_080 Hb_006846_080 Hb_003632_030--Hb_006846_080 Hb_119600_050 Hb_119600_050 Hb_003632_030--Hb_119600_050 Hb_005250_010 Hb_005250_010 Hb_003632_030--Hb_005250_010 Hb_001411_030 Hb_001411_030 Hb_003632_030--Hb_001411_030 Hb_000562_050 Hb_000562_050 Hb_003632_030--Hb_000562_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0395158 0.131466 0.215207 0.139269 0.238794 0.439658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0401699 0.063197 0.117613 0.442962 0.588824

CAGE analysis