Hb_001633_020

Information

Type -
Description -
Location Contig1633: 21743-21979
Sequence    

Annotation

kegg
ID vvi:100255255
description uncharacterized LOC100255255
nr
ID XP_007040391.1
description F22C12.10, putative isoform 2 [Theobroma cacao]
swissprot
ID Q9SZ67
description Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1
trembl
ID A0A061G6S0
description F22C12.10, putative isoform 2 OS=Theobroma cacao GN=TCM_016369 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001633_020 0.0 - - F22C12.10, putative isoform 2 [Theobroma cacao]
2 Hb_013405_040 0.1297395687 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002174_050 0.1365904228 - - -
4 Hb_001124_080 0.145413309 - - RecName: Full=Acyl carrier protein 2, chloroplastic; Short=ACP; Flags: Precursor [Cuphea lanceolata]
5 Hb_001673_010 0.1731252833 - - PREDICTED: uncharacterized protein LOC105635783 isoform X3 [Jatropha curcas]
6 Hb_001377_180 0.176872124 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Jatropha curcas]
7 Hb_004846_200 0.1802202389 - - PREDICTED: shikimate O-hydroxycinnamoyltransferase [Jatropha curcas]
8 Hb_012390_010 0.1825268079 - - pectate lyase 1 [Hevea brasiliensis]
9 Hb_003919_010 0.1887215935 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_000155_180 0.189718937 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
11 Hb_006487_050 0.1897499478 - - hypothetical protein PHAVU_005G049600g [Phaseolus vulgaris]
12 Hb_000025_090 0.1905818661 - - tubulin beta chain, putative [Ricinus communis]
13 Hb_000080_060 0.1923204649 - - RNA polymerase I, II and III subunit RPB8, partial [Manihot esculenta]
14 Hb_004445_040 0.1941935397 - - PREDICTED: uncharacterized protein LOC105639134 isoform X5 [Jatropha curcas]
15 Hb_001998_230 0.1944657648 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
16 Hb_002046_190 0.1947684372 - - calcium-binding family protein [Populus trichocarpa]
17 Hb_000284_110 0.1954396923 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
18 Hb_005608_030 0.1957717131 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
19 Hb_000554_010 0.1958597345 - - transporter, putative [Ricinus communis]
20 Hb_000649_050 0.195867533 - - PREDICTED: microtubule-associated protein 70-2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001633_020 Hb_001633_020 Hb_013405_040 Hb_013405_040 Hb_001633_020--Hb_013405_040 Hb_002174_050 Hb_002174_050 Hb_001633_020--Hb_002174_050 Hb_001124_080 Hb_001124_080 Hb_001633_020--Hb_001124_080 Hb_001673_010 Hb_001673_010 Hb_001633_020--Hb_001673_010 Hb_001377_180 Hb_001377_180 Hb_001633_020--Hb_001377_180 Hb_004846_200 Hb_004846_200 Hb_001633_020--Hb_004846_200 Hb_013405_040--Hb_001673_010 Hb_000866_420 Hb_000866_420 Hb_013405_040--Hb_000866_420 Hb_013405_040--Hb_001124_080 Hb_005271_150 Hb_005271_150 Hb_013405_040--Hb_005271_150 Hb_003919_010 Hb_003919_010 Hb_013405_040--Hb_003919_010 Hb_004060_030 Hb_004060_030 Hb_002174_050--Hb_004060_030 Hb_002374_020 Hb_002374_020 Hb_002174_050--Hb_002374_020 Hb_002174_050--Hb_001124_080 Hb_005527_020 Hb_005527_020 Hb_002174_050--Hb_005527_020 Hb_004445_040 Hb_004445_040 Hb_002174_050--Hb_004445_040 Hb_001266_080 Hb_001266_080 Hb_001124_080--Hb_001266_080 Hb_000284_110 Hb_000284_110 Hb_001124_080--Hb_000284_110 Hb_071736_010 Hb_071736_010 Hb_001124_080--Hb_071736_010 Hb_004072_020 Hb_004072_020 Hb_001124_080--Hb_004072_020 Hb_004055_140 Hb_004055_140 Hb_001124_080--Hb_004055_140 Hb_002616_050 Hb_002616_050 Hb_001124_080--Hb_002616_050 Hb_001673_010--Hb_071736_010 Hb_000649_050 Hb_000649_050 Hb_001673_010--Hb_000649_050 Hb_001855_010 Hb_001855_010 Hb_001673_010--Hb_001855_010 Hb_005883_050 Hb_005883_050 Hb_001673_010--Hb_005883_050 Hb_003641_050 Hb_003641_050 Hb_001673_010--Hb_003641_050 Hb_000023_140 Hb_000023_140 Hb_001673_010--Hb_000023_140 Hb_000155_180 Hb_000155_180 Hb_001377_180--Hb_000155_180 Hb_136731_010 Hb_136731_010 Hb_001377_180--Hb_136731_010 Hb_000771_100 Hb_000771_100 Hb_001377_180--Hb_000771_100 Hb_001377_180--Hb_002374_020 Hb_003994_270 Hb_003994_270 Hb_001377_180--Hb_003994_270 Hb_003011_040 Hb_003011_040 Hb_001377_180--Hb_003011_040 Hb_000025_090 Hb_000025_090 Hb_004846_200--Hb_000025_090 Hb_033153_020 Hb_033153_020 Hb_004846_200--Hb_033153_020 Hb_006487_050 Hb_006487_050 Hb_004846_200--Hb_006487_050 Hb_000554_010 Hb_000554_010 Hb_004846_200--Hb_000554_010 Hb_012395_180 Hb_012395_180 Hb_004846_200--Hb_012395_180 Hb_001002_040 Hb_001002_040 Hb_004846_200--Hb_001002_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.6796 0.482474 1.52797 9.33133 2.42425 17.243
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.96225 7.13615 5.09756 2.23779 4.64858

CAGE analysis