Hb_001633_030

Information

Type -
Description -
Location Contig1633: 23077-26319
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14878: 21628-22250 , PASA_asmbl_14879: 22376-22796 , PASA_asmbl_14880: 23012-26277
cDNA
(Sanger)
(ID:Location)		 023_K16.ab1: 23017-26237 , 024_K21.ab1: 23012-26241

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001633_030 0.0 - - -
2 Hb_007304_070 0.074537387 - - hypoxanthine-guanine phosphoribosyltransferase, putative [Ricinus communis]
3 Hb_000181_300 0.0759323242 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
4 Hb_002431_050 0.0761764585 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
5 Hb_010672_060 0.0764320255 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
6 Hb_153112_030 0.0782885368 - - PREDICTED: UPF0678 fatty acid-binding protein-like protein At1g79260 [Jatropha curcas]
7 Hb_004459_040 0.0823811649 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
8 Hb_003994_040 0.083236092 - - -
9 Hb_003579_030 0.0852882951 - - phosphatase 2C family protein [Populus trichocarpa]
10 Hb_000567_410 0.0853229269 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
11 Hb_000173_220 0.0856210509 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
12 Hb_003893_050 0.0859145115 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
13 Hb_001634_040 0.0865693398 transcription factor TF Family: NF-YC DNA polymerase epsilon subunit, putative [Ricinus communis]
14 Hb_017948_010 0.0870654746 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
15 Hb_007416_020 0.0881496529 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]
16 Hb_000680_140 0.0883671694 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
17 Hb_001085_120 0.0897879413 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
18 Hb_003053_030 0.0898172657 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
19 Hb_000265_050 0.0905349084 - - hypothetical protein CISIN_1g033530mg [Citrus sinensis]
20 Hb_003326_020 0.0908572456 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]

Gene co-expression network

sample Hb_001633_030 Hb_001633_030 Hb_007304_070 Hb_007304_070 Hb_001633_030--Hb_007304_070 Hb_000181_300 Hb_000181_300 Hb_001633_030--Hb_000181_300 Hb_002431_050 Hb_002431_050 Hb_001633_030--Hb_002431_050 Hb_010672_060 Hb_010672_060 Hb_001633_030--Hb_010672_060 Hb_153112_030 Hb_153112_030 Hb_001633_030--Hb_153112_030 Hb_004459_040 Hb_004459_040 Hb_001633_030--Hb_004459_040 Hb_000111_340 Hb_000111_340 Hb_007304_070--Hb_000111_340 Hb_003053_030 Hb_003053_030 Hb_007304_070--Hb_003053_030 Hb_000881_080 Hb_000881_080 Hb_007304_070--Hb_000881_080 Hb_007304_070--Hb_002431_050 Hb_000365_080 Hb_000365_080 Hb_007304_070--Hb_000365_080 Hb_000193_120 Hb_000193_120 Hb_000181_300--Hb_000193_120 Hb_000012_100 Hb_000012_100 Hb_000181_300--Hb_000012_100 Hb_000181_300--Hb_003053_030 Hb_001191_090 Hb_001191_090 Hb_000181_300--Hb_001191_090 Hb_002374_390 Hb_002374_390 Hb_000181_300--Hb_002374_390 Hb_000103_010 Hb_000103_010 Hb_000181_300--Hb_000103_010 Hb_002431_050--Hb_010672_060 Hb_002830_020 Hb_002830_020 Hb_002431_050--Hb_002830_020 Hb_003893_050 Hb_003893_050 Hb_002431_050--Hb_003893_050 Hb_000283_110 Hb_000283_110 Hb_002431_050--Hb_000283_110 Hb_007416_020 Hb_007416_020 Hb_002431_050--Hb_007416_020 Hb_029584_060 Hb_029584_060 Hb_002431_050--Hb_029584_060 Hb_005063_050 Hb_005063_050 Hb_010672_060--Hb_005063_050 Hb_000699_160 Hb_000699_160 Hb_010672_060--Hb_000699_160 Hb_010672_060--Hb_003893_050 Hb_010672_060--Hb_000111_340 Hb_010672_060--Hb_007416_020 Hb_017948_010 Hb_017948_010 Hb_153112_030--Hb_017948_010 Hb_000680_140 Hb_000680_140 Hb_153112_030--Hb_000680_140 Hb_000173_220 Hb_000173_220 Hb_153112_030--Hb_000173_220 Hb_153112_030--Hb_004459_040 Hb_153112_030--Hb_000181_300 Hb_033153_060 Hb_033153_060 Hb_004459_040--Hb_033153_060 Hb_007576_170 Hb_007576_170 Hb_004459_040--Hb_007576_170 Hb_004459_040--Hb_000680_140 Hb_006541_010 Hb_006541_010 Hb_004459_040--Hb_006541_010 Hb_002687_170 Hb_002687_170 Hb_004459_040--Hb_002687_170 Hb_000224_140 Hb_000224_140 Hb_004459_040--Hb_000224_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.4714 33.7881 32.3022 48.7667 32.4788 49.1018
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
126.96 218.52 113.074 30.9215 43.6953

CAGE analysis