Hb_001633_110

Information

Type -
Description -
Location Contig1633: 90382-92248
Sequence    

Annotation

kegg
ID pop:POPTR_0001s32930g
description POPTRDRAFT_846338; phosphoglycerate/bisphosphoglycerate mutase family protein
nr
ID XP_012067334.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
swissprot
ID Q9LW32
description Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1
trembl
ID A0A067L0A1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001633_110 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
2 Hb_011671_330 0.1109759599 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 4 [Jatropha curcas]
3 Hb_000953_140 0.1117137178 transcription factor TF Family: Trihelix Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
4 Hb_002377_050 0.1140536801 - - Agmatine deiminase, putative [Ricinus communis]
5 Hb_000208_290 0.1163275308 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2 isoform X2 [Jatropha curcas]
6 Hb_000027_270 0.116752223 - - PREDICTED: zinc finger protein 6 [Jatropha curcas]
7 Hb_001433_170 0.1186293638 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
8 Hb_000176_140 0.1253054437 - - PREDICTED: bystin [Jatropha curcas]
9 Hb_012654_020 0.1257342024 - - conserved hypothetical protein [Ricinus communis]
10 Hb_127979_010 0.1264020762 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
11 Hb_000483_370 0.126909085 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000161_030 0.1315260578 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
13 Hb_002149_040 0.1320505917 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005410_010 0.1321324417 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]
15 Hb_011609_190 0.1326774151 - - 14-3-3 protein 2 [Hevea brasiliensis]
16 Hb_001776_080 0.1332456447 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
17 Hb_154381_050 0.1345349705 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000179_250 0.1346817776 - - PREDICTED: WD repeat-containing protein 61-like [Citrus sinensis]
19 Hb_003734_130 0.1352676119 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Jatropha curcas]
20 Hb_001846_080 0.1361843916 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]

Gene co-expression network

sample Hb_001633_110 Hb_001633_110 Hb_011671_330 Hb_011671_330 Hb_001633_110--Hb_011671_330 Hb_000953_140 Hb_000953_140 Hb_001633_110--Hb_000953_140 Hb_002377_050 Hb_002377_050 Hb_001633_110--Hb_002377_050 Hb_000208_290 Hb_000208_290 Hb_001633_110--Hb_000208_290 Hb_000027_270 Hb_000027_270 Hb_001633_110--Hb_000027_270 Hb_001433_170 Hb_001433_170 Hb_001633_110--Hb_001433_170 Hb_006478_110 Hb_006478_110 Hb_011671_330--Hb_006478_110 Hb_000413_130 Hb_000413_130 Hb_011671_330--Hb_000413_130 Hb_029866_130 Hb_029866_130 Hb_011671_330--Hb_029866_130 Hb_029281_010 Hb_029281_010 Hb_011671_330--Hb_029281_010 Hb_004931_040 Hb_004931_040 Hb_011671_330--Hb_004931_040 Hb_000953_140--Hb_004931_040 Hb_000926_270 Hb_000926_270 Hb_000953_140--Hb_000926_270 Hb_160818_010 Hb_160818_010 Hb_000953_140--Hb_160818_010 Hb_001776_080 Hb_001776_080 Hb_000953_140--Hb_001776_080 Hb_002149_040 Hb_002149_040 Hb_000953_140--Hb_002149_040 Hb_003050_090 Hb_003050_090 Hb_000953_140--Hb_003050_090 Hb_002169_010 Hb_002169_010 Hb_002377_050--Hb_002169_010 Hb_000176_140 Hb_000176_140 Hb_002377_050--Hb_000176_140 Hb_002377_050--Hb_001776_080 Hb_000491_080 Hb_000491_080 Hb_002377_050--Hb_000491_080 Hb_002377_050--Hb_001433_170 Hb_127979_010 Hb_127979_010 Hb_002377_050--Hb_127979_010 Hb_004156_060 Hb_004156_060 Hb_000208_290--Hb_004156_060 Hb_000161_030 Hb_000161_030 Hb_000208_290--Hb_000161_030 Hb_006029_010 Hb_006029_010 Hb_000208_290--Hb_006029_010 Hb_022288_010 Hb_022288_010 Hb_000208_290--Hb_022288_010 Hb_154381_050 Hb_154381_050 Hb_000208_290--Hb_154381_050 Hb_006091_030 Hb_006091_030 Hb_000208_290--Hb_006091_030 Hb_000700_090 Hb_000700_090 Hb_000027_270--Hb_000700_090 Hb_003494_240 Hb_003494_240 Hb_000027_270--Hb_003494_240 Hb_005488_070 Hb_005488_070 Hb_000027_270--Hb_005488_070 Hb_000078_130 Hb_000078_130 Hb_000027_270--Hb_000078_130 Hb_001454_060 Hb_001454_060 Hb_000027_270--Hb_001454_060 Hb_000027_270--Hb_127979_010 Hb_000057_060 Hb_000057_060 Hb_001433_170--Hb_000057_060 Hb_001433_170--Hb_127979_010 Hb_000179_250 Hb_000179_250 Hb_001433_170--Hb_000179_250 Hb_001433_170--Hb_000176_140 Hb_026048_090 Hb_026048_090 Hb_001433_170--Hb_026048_090 Hb_011609_190 Hb_011609_190 Hb_001433_170--Hb_011609_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.981927 0.256586 0.0287976 0.034891 1.48761 1.41277
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.615262 0.483632 0.734502 0.310066 0

CAGE analysis