Hb_001633_170

Information

Type -
Description -
Location Contig1633: 149510-155242
Sequence    

Annotation

kegg
ID rcu:RCOM_1445440
description aspartate kinase, putative (EC:2.7.2.4)
nr
ID XP_012067341.1
description PREDICTED: aspartokinase 2, chloroplastic-like isoform X1 [Jatropha curcas]
swissprot
ID O23653
description Aspartokinase 2, chloroplastic OS=Arabidopsis thaliana GN=AK2 PE=1 SV=2
trembl
ID B9RGY9
description Aspartokinase OS=Ricinus communis GN=RCOM_1445440 PE=3 SV=1
Gene Ontology
ID GO:0004072
description aspartate kinase 3 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14896: 149621-155120
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001633_170 0.0 - - PREDICTED: aspartokinase 2, chloroplastic-like isoform X1 [Jatropha curcas]
2 Hb_009666_040 0.0997611885 - - glutathione transferase, putative [Ricinus communis]
3 Hb_000627_120 0.1027539126 - - PREDICTED: probable adenylate kinase 7, mitochondrial [Jatropha curcas]
4 Hb_008311_010 0.1049982513 - - hypothetical protein CARUB_v10003781mg [Capsella rubella]
5 Hb_002527_070 0.1077580275 - - axonemal dynein light chain, putative [Ricinus communis]
6 Hb_001141_280 0.1081369359 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Vitis vinifera]
7 Hb_000205_270 0.1112216022 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
8 Hb_000200_340 0.1132432655 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
9 Hb_183086_060 0.1134586568 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
10 Hb_023292_010 0.1166854567 - - Cucumisin precursor, putative [Ricinus communis]
11 Hb_001155_030 0.1173413426 - - 60S ribosomal protein L10A [Hevea brasiliensis]
12 Hb_000840_210 0.1180705378 - - actin actin-like protein [Coniophora puteana RWD-64-598 SS2]
13 Hb_001718_100 0.1202600177 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
14 Hb_131864_040 0.1209913839 - - PREDICTED: uncharacterized protein LOC105649406 isoform X1 [Jatropha curcas]
15 Hb_003408_030 0.1217241247 - - PREDICTED: protein YIF1B [Jatropha curcas]
16 Hb_001829_060 0.1232688421 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
17 Hb_000836_070 0.1237813287 - - protein binding protein, putative [Ricinus communis]
18 Hb_000671_150 0.1246092805 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
19 Hb_071736_020 0.1252716886 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
20 Hb_008066_010 0.1252722022 - - PREDICTED: translation initiation factor eIF-2B subunit alpha-like [Jatropha curcas]

Gene co-expression network

sample Hb_001633_170 Hb_001633_170 Hb_009666_040 Hb_009666_040 Hb_001633_170--Hb_009666_040 Hb_000627_120 Hb_000627_120 Hb_001633_170--Hb_000627_120 Hb_008311_010 Hb_008311_010 Hb_001633_170--Hb_008311_010 Hb_002527_070 Hb_002527_070 Hb_001633_170--Hb_002527_070 Hb_001141_280 Hb_001141_280 Hb_001633_170--Hb_001141_280 Hb_000205_270 Hb_000205_270 Hb_001633_170--Hb_000205_270 Hb_001829_060 Hb_001829_060 Hb_009666_040--Hb_001829_060 Hb_009666_040--Hb_001141_280 Hb_000239_010 Hb_000239_010 Hb_009666_040--Hb_000239_010 Hb_009666_040--Hb_000205_270 Hb_000329_310 Hb_000329_310 Hb_009666_040--Hb_000329_310 Hb_000979_230 Hb_000979_230 Hb_009666_040--Hb_000979_230 Hb_002716_070 Hb_002716_070 Hb_000627_120--Hb_002716_070 Hb_003408_030 Hb_003408_030 Hb_000627_120--Hb_003408_030 Hb_003376_120 Hb_003376_120 Hb_000627_120--Hb_003376_120 Hb_000627_120--Hb_000205_270 Hb_044662_070 Hb_044662_070 Hb_000627_120--Hb_044662_070 Hb_009486_130 Hb_009486_130 Hb_000627_120--Hb_009486_130 Hb_000046_110 Hb_000046_110 Hb_008311_010--Hb_000046_110 Hb_000377_060 Hb_000377_060 Hb_008311_010--Hb_000377_060 Hb_000001_050 Hb_000001_050 Hb_008311_010--Hb_000001_050 Hb_000836_070 Hb_000836_070 Hb_008311_010--Hb_000836_070 Hb_004899_320 Hb_004899_320 Hb_008311_010--Hb_004899_320 Hb_001109_020 Hb_001109_020 Hb_008311_010--Hb_001109_020 Hb_001427_120 Hb_001427_120 Hb_002527_070--Hb_001427_120 Hb_000861_040 Hb_000861_040 Hb_002527_070--Hb_000861_040 Hb_001711_030 Hb_001711_030 Hb_002527_070--Hb_001711_030 Hb_002527_070--Hb_003408_030 Hb_000983_100 Hb_000983_100 Hb_002527_070--Hb_000983_100 Hb_002352_010 Hb_002352_010 Hb_002527_070--Hb_002352_010 Hb_001141_280--Hb_001829_060 Hb_003018_190 Hb_003018_190 Hb_001141_280--Hb_003018_190 Hb_001862_100 Hb_001862_100 Hb_001141_280--Hb_001862_100 Hb_001141_280--Hb_000239_010 Hb_001141_280--Hb_001109_020 Hb_016065_010 Hb_016065_010 Hb_000205_270--Hb_016065_010 Hb_000009_160 Hb_000009_160 Hb_000205_270--Hb_000009_160 Hb_000205_270--Hb_001109_020 Hb_005488_010 Hb_005488_010 Hb_000205_270--Hb_005488_010 Hb_000205_270--Hb_000329_310 Hb_000444_050 Hb_000444_050 Hb_000205_270--Hb_000444_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.0234 11.0768 20.3682 14.5561 27.6535 68.6825
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
65.9981 54.6078 95.1587 20.9468 7.6857

CAGE analysis