Hb_001633_210

Information

Type -
Description -
Location Contig1633: 172239-181455
Sequence    

Annotation

kegg
ID rcu:RCOM_1445270
description hypothetical protein
nr
ID XP_012067349.1
description PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
swissprot
ID Q32NQ8
description RING finger protein 10 OS=Xenopus laevis GN=rnf10 PE=2 SV=1
trembl
ID A0A067LCN1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26872 PE=4 SV=1
Gene Ontology
ID GO:0006996
description ring finger protein 10 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14902: 172272-181302 , PASA_asmbl_14903: 173252-173610 , PASA_asmbl_14904: 174638-174881
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001633_210 0.0 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
2 Hb_000250_060 0.0493617974 - - PREDICTED: 28S ribosomal protein S29, mitochondrial [Jatropha curcas]
3 Hb_000840_250 0.0552739985 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
4 Hb_010812_120 0.056955688 - - hypothetical protein JCGZ_03293 [Jatropha curcas]
5 Hb_000614_250 0.0573324147 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
6 Hb_000185_030 0.0587865027 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
7 Hb_000297_010 0.0601370288 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
8 Hb_001014_030 0.0611713107 - - ATP binding protein, putative [Ricinus communis]
9 Hb_000710_060 0.0634270414 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
10 Hb_007416_320 0.0641360666 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004453_050 0.0651888887 - - PREDICTED: uncharacterized protein LOC105637675 [Jatropha curcas]
12 Hb_002046_180 0.0687022855 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
13 Hb_003349_090 0.0691167165 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
14 Hb_000049_210 0.0707922122 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
15 Hb_000069_420 0.0716598193 - - Beclin-1, putative [Ricinus communis]
16 Hb_000866_220 0.0741858889 - - PREDICTED: uncharacterized protein LOC105642989 [Jatropha curcas]
17 Hb_001726_020 0.0786035591 - - PREDICTED: endophilin-A1 [Jatropha curcas]
18 Hb_000483_260 0.0787634764 - - PREDICTED: dihydroorotase, mitochondrial isoform X1 [Populus euphratica]
19 Hb_003994_260 0.0789897607 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
20 Hb_002481_080 0.0791960562 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_001633_210 Hb_001633_210 Hb_000250_060 Hb_000250_060 Hb_001633_210--Hb_000250_060 Hb_000840_250 Hb_000840_250 Hb_001633_210--Hb_000840_250 Hb_010812_120 Hb_010812_120 Hb_001633_210--Hb_010812_120 Hb_000614_250 Hb_000614_250 Hb_001633_210--Hb_000614_250 Hb_000185_030 Hb_000185_030 Hb_001633_210--Hb_000185_030 Hb_000297_010 Hb_000297_010 Hb_001633_210--Hb_000297_010 Hb_005539_280 Hb_005539_280 Hb_000250_060--Hb_005539_280 Hb_001726_020 Hb_001726_020 Hb_000250_060--Hb_001726_020 Hb_000250_060--Hb_000297_010 Hb_000250_060--Hb_010812_120 Hb_002046_180 Hb_002046_180 Hb_000250_060--Hb_002046_180 Hb_000840_250--Hb_000614_250 Hb_000840_250--Hb_000297_010 Hb_001014_030 Hb_001014_030 Hb_000840_250--Hb_001014_030 Hb_000840_250--Hb_000185_030 Hb_000230_390 Hb_000230_390 Hb_000840_250--Hb_000230_390 Hb_003349_090 Hb_003349_090 Hb_010812_120--Hb_003349_090 Hb_089032_030 Hb_089032_030 Hb_010812_120--Hb_089032_030 Hb_000016_160 Hb_000016_160 Hb_010812_120--Hb_000016_160 Hb_003994_260 Hb_003994_260 Hb_010812_120--Hb_003994_260 Hb_000614_250--Hb_001014_030 Hb_002450_020 Hb_002450_020 Hb_000614_250--Hb_002450_020 Hb_000710_060 Hb_000710_060 Hb_000614_250--Hb_000710_060 Hb_003847_030 Hb_003847_030 Hb_000614_250--Hb_003847_030 Hb_000185_030--Hb_000297_010 Hb_000185_030--Hb_000710_060 Hb_003761_010 Hb_003761_010 Hb_000185_030--Hb_003761_010 Hb_008725_230 Hb_008725_230 Hb_000185_030--Hb_008725_230 Hb_004724_150 Hb_004724_150 Hb_000297_010--Hb_004724_150 Hb_015934_040 Hb_015934_040 Hb_000297_010--Hb_015934_040 Hb_000245_040 Hb_000245_040 Hb_000297_010--Hb_000245_040 Hb_000041_100 Hb_000041_100 Hb_000297_010--Hb_000041_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.0445 23.3089 14.6954 21.3964 14.7202 22.0829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.0665 36.3599 38.3728 25.815 15.9278

CAGE analysis