Hb_001634_040

Information

Type transcription factor
Description TF Family: NF-YC
Location Contig1634: 16449-19054
Sequence    

Annotation

kegg
ID rcu:RCOM_0550250
description DNA polymerase epsilon subunit, putative
nr
ID XP_002532613.1
description DNA polymerase epsilon subunit, putative [Ricinus communis]
swissprot
ID Q6BX14
description DNA polymerase epsilon subunit C OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=DPB3 PE=3 SV=1
trembl
ID B9T2Z4
description DNA polymerase epsilon subunit, putative OS=Ricinus communis GN=RCOM_0550250 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dna polymerase epsilon subunit c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14909: 16415-19023
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001634_040 0.0 transcription factor TF Family: NF-YC DNA polymerase epsilon subunit, putative [Ricinus communis]
2 Hb_007575_070 0.0601603784 - - Histone H3.2 [Glycine soja]
3 Hb_000062_390 0.0665877964 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
4 Hb_000805_130 0.0711192933 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000181_300 0.0724387233 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
6 Hb_000012_100 0.0725843305 - - UPF0587 protein C1orf123 homolog [Jatropha curcas]
7 Hb_000193_120 0.0745327371 - - PREDICTED: protein preY, mitochondrial [Jatropha curcas]
8 Hb_002588_010 0.075714454 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
9 Hb_007944_040 0.076321899 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
10 Hb_000905_180 0.0800987427 - - 60S ribosomal protein L31A [Hevea brasiliensis]
11 Hb_003053_030 0.0854850298 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
12 Hb_001633_030 0.0865693398 - - -
13 Hb_002687_170 0.0878673776 - - PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog [Jatropha curcas]
14 Hb_001158_230 0.0884305384 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
15 Hb_002999_050 0.0889913624 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
16 Hb_010672_060 0.0898402687 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
17 Hb_007416_020 0.0901642126 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]
18 Hb_000111_340 0.0902791158 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
19 Hb_076626_010 0.0913947598 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001268_140 0.0915155876 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001634_040 Hb_001634_040 Hb_007575_070 Hb_007575_070 Hb_001634_040--Hb_007575_070 Hb_000062_390 Hb_000062_390 Hb_001634_040--Hb_000062_390 Hb_000805_130 Hb_000805_130 Hb_001634_040--Hb_000805_130 Hb_000181_300 Hb_000181_300 Hb_001634_040--Hb_000181_300 Hb_000012_100 Hb_000012_100 Hb_001634_040--Hb_000012_100 Hb_000193_120 Hb_000193_120 Hb_001634_040--Hb_000193_120 Hb_007575_070--Hb_000805_130 Hb_007944_040 Hb_007944_040 Hb_007575_070--Hb_007944_040 Hb_002588_010 Hb_002588_010 Hb_007575_070--Hb_002588_010 Hb_007575_070--Hb_000062_390 Hb_001045_080 Hb_001045_080 Hb_007575_070--Hb_001045_080 Hb_000062_390--Hb_002588_010 Hb_019516_100 Hb_019516_100 Hb_000062_390--Hb_019516_100 Hb_001155_040 Hb_001155_040 Hb_000062_390--Hb_001155_040 Hb_000093_110 Hb_000093_110 Hb_000062_390--Hb_000093_110 Hb_007304_070 Hb_007304_070 Hb_000062_390--Hb_007304_070 Hb_000172_420 Hb_000172_420 Hb_000805_130--Hb_000172_420 Hb_000805_130--Hb_000062_390 Hb_008948_050 Hb_008948_050 Hb_000805_130--Hb_008948_050 Hb_076626_010 Hb_076626_010 Hb_000805_130--Hb_076626_010 Hb_000181_300--Hb_000193_120 Hb_000181_300--Hb_000012_100 Hb_003053_030 Hb_003053_030 Hb_000181_300--Hb_003053_030 Hb_001191_090 Hb_001191_090 Hb_000181_300--Hb_001191_090 Hb_002374_390 Hb_002374_390 Hb_000181_300--Hb_002374_390 Hb_000103_010 Hb_000103_010 Hb_000181_300--Hb_000103_010 Hb_000012_100--Hb_000193_120 Hb_004156_040 Hb_004156_040 Hb_000012_100--Hb_004156_040 Hb_000012_100--Hb_003053_030 Hb_006573_220 Hb_006573_220 Hb_000012_100--Hb_006573_220 Hb_000193_120--Hb_000103_010 Hb_000193_120--Hb_004156_040 Hb_001016_090 Hb_001016_090 Hb_000193_120--Hb_001016_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.2994 14.3957 32.0854 23.033 19.7609 40.0747
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
102.599 171.056 74.7675 28.6632 20.9203

CAGE analysis