Hb_001634_070

Information

Type -
Description -
Location Contig1634: 56948-69153
Sequence    

Annotation

kegg
ID rcu:RCOM_0550070
description hypothetical protein
nr
ID XP_002532605.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SNC3
description Fasciclin-like arabinogalactan protein 4 OS=Arabidopsis thaliana GN=FLA4 PE=1 SV=1
trembl
ID B9T2Y6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0550070 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14914: 65253-65841
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001634_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008493_020 0.0515025427 - - linamarase [Manihot esculenta]
3 Hb_060416_010 0.0648059244 - - conserved hypothetical protein [Ricinus communis]
4 Hb_009896_010 0.06750992 - - ABC transporter G family member 15 [Morus notabilis]
5 Hb_053058_010 0.0689393918 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001597_040 0.0706966613 - - -
7 Hb_000027_020 0.071684113 - - Nonspecific lipid-transfer protein, putative [Ricinus communis]
8 Hb_103942_010 0.0755960876 - - rab5A-like protein [Trichinella spiralis]
9 Hb_001454_030 0.0763399051 - - PREDICTED: flowering-promoting factor 1-like protein 3 [Jatropha curcas]
10 Hb_001322_200 0.0799696431 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000103_210 0.0806407836 - - PREDICTED: protein lin-12-like isoform X1 [Populus euphratica]
12 Hb_000203_130 0.0817080728 - - -
13 Hb_118941_010 0.0834523113 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
14 Hb_001817_050 0.0854315145 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
15 Hb_002235_340 0.0865491022 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
16 Hb_103942_020 0.0867278273 - - unknown [Zea mays]
17 Hb_003092_010 0.0873664899 - - hypothetical protein POPTR_0025s00750g [Populus trichocarpa]
18 Hb_005699_100 0.0901857031 - - hypothetical protein POPTR_0013s12390g [Populus trichocarpa]
19 Hb_007441_320 0.0920402753 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
20 Hb_153199_010 0.0923094304 - - -

Gene co-expression network

sample Hb_001634_070 Hb_001634_070 Hb_008493_020 Hb_008493_020 Hb_001634_070--Hb_008493_020 Hb_060416_010 Hb_060416_010 Hb_001634_070--Hb_060416_010 Hb_009896_010 Hb_009896_010 Hb_001634_070--Hb_009896_010 Hb_053058_010 Hb_053058_010 Hb_001634_070--Hb_053058_010 Hb_001597_040 Hb_001597_040 Hb_001634_070--Hb_001597_040 Hb_000027_020 Hb_000027_020 Hb_001634_070--Hb_000027_020 Hb_008493_020--Hb_060416_010 Hb_008493_020--Hb_009896_010 Hb_008493_020--Hb_053058_010 Hb_103942_010 Hb_103942_010 Hb_008493_020--Hb_103942_010 Hb_001322_200 Hb_001322_200 Hb_008493_020--Hb_001322_200 Hb_000002_190 Hb_000002_190 Hb_060416_010--Hb_000002_190 Hb_000003_520 Hb_000003_520 Hb_060416_010--Hb_000003_520 Hb_000005_170 Hb_000005_170 Hb_060416_010--Hb_000005_170 Hb_000009_230 Hb_000009_230 Hb_060416_010--Hb_000009_230 Hb_000011_110 Hb_000011_110 Hb_060416_010--Hb_000011_110 Hb_009896_010--Hb_053058_010 Hb_000637_090 Hb_000637_090 Hb_009896_010--Hb_000637_090 Hb_007677_010 Hb_007677_010 Hb_009896_010--Hb_007677_010 Hb_001956_170 Hb_001956_170 Hb_009896_010--Hb_001956_170 Hb_053058_010--Hb_001597_040 Hb_050786_010 Hb_050786_010 Hb_053058_010--Hb_050786_010 Hb_053058_010--Hb_060416_010 Hb_001597_040--Hb_050786_010 Hb_001597_040--Hb_009896_010 Hb_001597_040--Hb_008493_020 Hb_002186_190 Hb_002186_190 Hb_001597_040--Hb_002186_190 Hb_005699_100 Hb_005699_100 Hb_000027_020--Hb_005699_100 Hb_118941_010 Hb_118941_010 Hb_000027_020--Hb_118941_010 Hb_000645_040 Hb_000645_040 Hb_000027_020--Hb_000645_040 Hb_002105_070 Hb_002105_070 Hb_000027_020--Hb_002105_070 Hb_000027_020--Hb_001322_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.263866 0.303021 55.2465 0.0190496 0.0126297
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.412984

CAGE analysis