Hb_001634_080

Information

Type transcription factor
Description TF Family: C2H2
Location Contig1634: 93454-99215
Sequence    

Annotation

kegg
ID rcu:RCOM_0550010
description nucleic acid binding protein, putative
nr
ID XP_002532599.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID Q944L3
description Protein indeterminate-domain 9 OS=Arabidopsis thaliana GN=IDD9 PE=2 SV=1
trembl
ID B9T2Y0
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0550010 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein jackdaw-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14915: 96597-98948
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001634_080 0.0 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
2 Hb_000108_090 0.0367750368 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
3 Hb_107809_010 0.0784713362 - - JHL06P13.14 [Jatropha curcas]
4 Hb_005542_040 0.0983961896 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 55 [Jatropha curcas]
5 Hb_127661_010 0.0995258838 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_170878_050 0.0998431669 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
7 Hb_007676_040 0.1017663655 - - cellulose synthase, putative [Ricinus communis]
8 Hb_000261_370 0.1025119527 - - -
9 Hb_001565_010 0.1042171386 - - hypothetical protein JCGZ_07371 [Jatropha curcas]
10 Hb_029576_100 0.1066513351 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
11 Hb_000501_040 0.1080648029 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_094148_010 0.1084044759 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
13 Hb_006788_100 0.1170663672 - - PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
14 Hb_000289_100 0.1182086272 - - carbonyl reductase, putative [Ricinus communis]
15 Hb_005276_220 0.1215704585 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
16 Hb_005496_170 0.1248891423 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
17 Hb_000163_250 0.128137942 - - unnamed protein product [Vitis vinifera]
18 Hb_000521_360 0.1283940487 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
19 Hb_016637_020 0.1289242597 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
20 Hb_007919_030 0.1333985554 - - -

Gene co-expression network

sample Hb_001634_080 Hb_001634_080 Hb_000108_090 Hb_000108_090 Hb_001634_080--Hb_000108_090 Hb_107809_010 Hb_107809_010 Hb_001634_080--Hb_107809_010 Hb_005542_040 Hb_005542_040 Hb_001634_080--Hb_005542_040 Hb_127661_010 Hb_127661_010 Hb_001634_080--Hb_127661_010 Hb_170878_050 Hb_170878_050 Hb_001634_080--Hb_170878_050 Hb_007676_040 Hb_007676_040 Hb_001634_080--Hb_007676_040 Hb_000108_090--Hb_107809_010 Hb_001565_010 Hb_001565_010 Hb_000108_090--Hb_001565_010 Hb_000108_090--Hb_005542_040 Hb_000108_090--Hb_007676_040 Hb_094148_010 Hb_094148_010 Hb_000108_090--Hb_094148_010 Hb_107809_010--Hb_005542_040 Hb_008783_020 Hb_008783_020 Hb_107809_010--Hb_008783_020 Hb_005276_220 Hb_005276_220 Hb_107809_010--Hb_005276_220 Hb_000521_360 Hb_000521_360 Hb_107809_010--Hb_000521_360 Hb_005542_040--Hb_007676_040 Hb_005542_040--Hb_005276_220 Hb_001318_120 Hb_001318_120 Hb_005542_040--Hb_001318_120 Hb_011472_020 Hb_011472_020 Hb_005542_040--Hb_011472_020 Hb_000261_370 Hb_000261_370 Hb_127661_010--Hb_000261_370 Hb_016637_020 Hb_016637_020 Hb_127661_010--Hb_016637_020 Hb_029576_100 Hb_029576_100 Hb_127661_010--Hb_029576_100 Hb_005496_170 Hb_005496_170 Hb_127661_010--Hb_005496_170 Hb_000680_020 Hb_000680_020 Hb_127661_010--Hb_000680_020 Hb_000501_040 Hb_000501_040 Hb_127661_010--Hb_000501_040 Hb_001660_050 Hb_001660_050 Hb_170878_050--Hb_001660_050 Hb_029866_110 Hb_029866_110 Hb_170878_050--Hb_029866_110 Hb_170878_050--Hb_016637_020 Hb_009659_040 Hb_009659_040 Hb_170878_050--Hb_009659_040 Hb_001819_010 Hb_001819_010 Hb_170878_050--Hb_001819_010 Hb_001345_010 Hb_001345_010 Hb_007676_040--Hb_001345_010 Hb_000501_110 Hb_000501_110 Hb_007676_040--Hb_000501_110 Hb_007676_040--Hb_000521_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0455283 15.2207 14.4747 4.99155 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0172198 0 0.0258441 20.1907 12.2763

CAGE analysis