Hb_001635_060

Information

Type -
Description -
Location Contig1635: 50895-52616
Sequence    

Annotation

kegg
ID rcu:RCOM_1674280
description eukaryotic translation initiation factor 3 subunit, putative
nr
ID XP_002509464.1
description eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
swissprot
ID P56820
description Eukaryotic translation initiation factor 3 subunit D OS=Arabidopsis thaliana GN=TIF3D1 PE=1 SV=1
trembl
ID B9RBD0
description Eukaryotic translation initiation factor 3 subunit D OS=Ricinus communis GN=RCOM_1674280 PE=3 SV=1
Gene Ontology
ID GO:0005852
description eukaryotic translation initiation factor 3 subunit d-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14934: 49933-52705
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001635_060 0.0 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
2 Hb_001898_220 0.0610946611 - - PREDICTED: regulator of nonsense transcripts UPF3-like isoform X1 [Jatropha curcas]
3 Hb_011485_070 0.0770570969 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
4 Hb_000185_040 0.0820107768 - - PREDICTED: uncharacterized protein LOC103343434 [Prunus mume]
5 Hb_000656_110 0.0834448579 - - nucleolysin tia-1, putative [Ricinus communis]
6 Hb_004218_110 0.087658325 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
7 Hb_007441_230 0.0890209017 - - PREDICTED: probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase [Jatropha curcas]
8 Hb_000041_050 0.0890876119 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
9 Hb_007044_140 0.0892304384 - - PREDICTED: translation initiation factor eIF-2B subunit delta [Jatropha curcas]
10 Hb_004032_150 0.0897246037 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
11 Hb_000700_110 0.0904578674 - - Vesicle-associated membrane protein, putative [Ricinus communis]
12 Hb_000000_250 0.0916940324 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g19290 [Jatropha curcas]
13 Hb_002675_070 0.0926633729 - - PREDICTED: protein CASC3 [Jatropha curcas]
14 Hb_040575_010 0.0927467306 - - PREDICTED: uncharacterized protein LOC105637675 [Jatropha curcas]
15 Hb_001344_010 0.0942139449 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]
16 Hb_005490_030 0.0942428475 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]
17 Hb_003092_030 0.0946829899 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
18 Hb_000061_460 0.0949412843 transcription factor TF Family: SNF2 ATP binding protein, putative [Ricinus communis]
19 Hb_000805_020 0.0965424116 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
20 Hb_093084_050 0.0967643852 - - PREDICTED: uncharacterized protein LOC105640739 [Jatropha curcas]

Gene co-expression network

sample Hb_001635_060 Hb_001635_060 Hb_001898_220 Hb_001898_220 Hb_001635_060--Hb_001898_220 Hb_011485_070 Hb_011485_070 Hb_001635_060--Hb_011485_070 Hb_000185_040 Hb_000185_040 Hb_001635_060--Hb_000185_040 Hb_000656_110 Hb_000656_110 Hb_001635_060--Hb_000656_110 Hb_004218_110 Hb_004218_110 Hb_001635_060--Hb_004218_110 Hb_007441_230 Hb_007441_230 Hb_001635_060--Hb_007441_230 Hb_000000_250 Hb_000000_250 Hb_001898_220--Hb_000000_250 Hb_093084_050 Hb_093084_050 Hb_001898_220--Hb_093084_050 Hb_189003_080 Hb_189003_080 Hb_001898_220--Hb_189003_080 Hb_002026_180 Hb_002026_180 Hb_001898_220--Hb_002026_180 Hb_000041_050 Hb_000041_050 Hb_001898_220--Hb_000041_050 Hb_011485_070--Hb_000185_040 Hb_001341_170 Hb_001341_170 Hb_011485_070--Hb_001341_170 Hb_004032_150 Hb_004032_150 Hb_011485_070--Hb_004032_150 Hb_000092_170 Hb_000092_170 Hb_011485_070--Hb_000092_170 Hb_002481_080 Hb_002481_080 Hb_011485_070--Hb_002481_080 Hb_002675_070 Hb_002675_070 Hb_011485_070--Hb_002675_070 Hb_002740_180 Hb_002740_180 Hb_000185_040--Hb_002740_180 Hb_001377_490 Hb_001377_490 Hb_000185_040--Hb_001377_490 Hb_000318_290 Hb_000318_290 Hb_000185_040--Hb_000318_290 Hb_000185_040--Hb_001341_170 Hb_002435_120 Hb_002435_120 Hb_000185_040--Hb_002435_120 Hb_000656_110--Hb_093084_050 Hb_000656_110--Hb_000041_050 Hb_001102_140 Hb_001102_140 Hb_000656_110--Hb_001102_140 Hb_000700_110 Hb_000700_110 Hb_000656_110--Hb_000700_110 Hb_003125_010 Hb_003125_010 Hb_000656_110--Hb_003125_010 Hb_001369_690 Hb_001369_690 Hb_000656_110--Hb_001369_690 Hb_002759_060 Hb_002759_060 Hb_004218_110--Hb_002759_060 Hb_025240_040 Hb_025240_040 Hb_004218_110--Hb_025240_040 Hb_004218_110--Hb_001369_690 Hb_004254_120 Hb_004254_120 Hb_004218_110--Hb_004254_120 Hb_000120_460 Hb_000120_460 Hb_004218_110--Hb_000120_460 Hb_002005_020 Hb_002005_020 Hb_004218_110--Hb_002005_020 Hb_002137_020 Hb_002137_020 Hb_007441_230--Hb_002137_020 Hb_000805_020 Hb_000805_020 Hb_007441_230--Hb_000805_020 Hb_004223_280 Hb_004223_280 Hb_007441_230--Hb_004223_280 Hb_005305_080 Hb_005305_080 Hb_007441_230--Hb_005305_080 Hb_007441_200 Hb_007441_200 Hb_007441_230--Hb_007441_200 Hb_000571_120 Hb_000571_120 Hb_007441_230--Hb_000571_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
48.354 58.341 22.8098 57.3631 59.2591 114.165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
96.9114 74.6105 127.901 76.2739 40.2234

CAGE analysis