Hb_001635_080

Information

Type transcription factor
Description TF Family: C2C2-Dof
Location Contig1635: 61180-63174
Sequence    

Annotation

kegg
ID pop:POPTR_0003s02890g
description hypothetical protein
nr
ID XP_012069011.1
description PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
swissprot
ID O82155
description Dof zinc finger protein DOF1.7 OS=Arabidopsis thaliana GN=DOF1.7 PE=2 SV=1
trembl
ID A0A067KXF0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24801 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dof zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001635_080 0.0 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
2 Hb_031042_010 0.1325257652 - - hypothetical protein JCGZ_03409 [Jatropha curcas]
3 Hb_002301_060 0.1501504063 - - hypothetical protein JCGZ_21483 [Jatropha curcas]
4 Hb_006949_040 0.1546890418 - - protein phosphatase 2c, putative [Ricinus communis]
5 Hb_001322_150 0.1547668991 - - PREDICTED: vesicle-associated protein 2-1 [Jatropha curcas]
6 Hb_004007_100 0.1580938641 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
7 Hb_000173_340 0.1586637877 - - hypothetical protein JCGZ_02075 [Jatropha curcas]
8 Hb_002316_060 0.1611484123 - - PREDICTED: uncharacterized protein LOC105640410 [Jatropha curcas]
9 Hb_001048_020 0.1612057641 - - PREDICTED: E3 ubiquitin-protein ligase FANCL isoform X1 [Jatropha curcas]
10 Hb_003943_130 0.1614615761 - - PREDICTED: uncharacterized protein LOC105636341 [Jatropha curcas]
11 Hb_000196_050 0.162557339 - - hypothetical protein JCGZ_20265 [Jatropha curcas]
12 Hb_148025_010 0.1627330935 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]
13 Hb_006909_030 0.1630358044 - - 40S ribosomal protein S17B [Hevea brasiliensis]
14 Hb_005686_060 0.1633169855 - - PREDICTED: uncharacterized protein LOC101508199 [Cicer arietinum]
15 Hb_000953_020 0.165167187 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
16 Hb_000009_080 0.1661331428 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 15 [Jatropha curcas]
17 Hb_000777_030 0.1673866858 - - histone h2a, putative [Ricinus communis]
18 Hb_000347_340 0.1673897671 - - ring finger, putative [Ricinus communis]
19 Hb_000108_140 0.1682509908 - - hypothetical protein CICLE_v10019690mg [Citrus clementina]
20 Hb_000347_200 0.168558772 - - lsm1, putative [Ricinus communis]

Gene co-expression network

sample Hb_001635_080 Hb_001635_080 Hb_031042_010 Hb_031042_010 Hb_001635_080--Hb_031042_010 Hb_002301_060 Hb_002301_060 Hb_001635_080--Hb_002301_060 Hb_006949_040 Hb_006949_040 Hb_001635_080--Hb_006949_040 Hb_001322_150 Hb_001322_150 Hb_001635_080--Hb_001322_150 Hb_004007_100 Hb_004007_100 Hb_001635_080--Hb_004007_100 Hb_000173_340 Hb_000173_340 Hb_001635_080--Hb_000173_340 Hb_000196_050 Hb_000196_050 Hb_031042_010--Hb_000196_050 Hb_031042_010--Hb_004007_100 Hb_000500_060 Hb_000500_060 Hb_031042_010--Hb_000500_060 Hb_007441_270 Hb_007441_270 Hb_031042_010--Hb_007441_270 Hb_002701_050 Hb_002701_050 Hb_031042_010--Hb_002701_050 Hb_000561_020 Hb_000561_020 Hb_031042_010--Hb_000561_020 Hb_000125_100 Hb_000125_100 Hb_002301_060--Hb_000125_100 Hb_001488_070 Hb_001488_070 Hb_002301_060--Hb_001488_070 Hb_009265_070 Hb_009265_070 Hb_002301_060--Hb_009265_070 Hb_002813_040 Hb_002813_040 Hb_002301_060--Hb_002813_040 Hb_003671_020 Hb_003671_020 Hb_002301_060--Hb_003671_020 Hb_008226_060 Hb_008226_060 Hb_002301_060--Hb_008226_060 Hb_006949_050 Hb_006949_050 Hb_006949_040--Hb_006949_050 Hb_000193_290 Hb_000193_290 Hb_006949_040--Hb_000193_290 Hb_061802_020 Hb_061802_020 Hb_006949_040--Hb_061802_020 Hb_000554_020 Hb_000554_020 Hb_006949_040--Hb_000554_020 Hb_000030_150 Hb_000030_150 Hb_006949_040--Hb_000030_150 Hb_001671_020 Hb_001671_020 Hb_006949_040--Hb_001671_020 Hb_015175_030 Hb_015175_030 Hb_001322_150--Hb_015175_030 Hb_003414_050 Hb_003414_050 Hb_001322_150--Hb_003414_050 Hb_000656_170 Hb_000656_170 Hb_001322_150--Hb_000656_170 Hb_001322_150--Hb_003671_020 Hb_007100_030 Hb_007100_030 Hb_001322_150--Hb_007100_030 Hb_001322_150--Hb_000125_100 Hb_004007_100--Hb_002701_050 Hb_008173_120 Hb_008173_120 Hb_004007_100--Hb_008173_120 Hb_148209_080 Hb_148209_080 Hb_004007_100--Hb_148209_080 Hb_000684_230 Hb_000684_230 Hb_004007_100--Hb_000684_230 Hb_001242_110 Hb_001242_110 Hb_004007_100--Hb_001242_110 Hb_000347_200 Hb_000347_200 Hb_000173_340--Hb_000347_200 Hb_000700_110 Hb_000700_110 Hb_000173_340--Hb_000700_110 Hb_005117_010 Hb_005117_010 Hb_000173_340--Hb_005117_010 Hb_001898_220 Hb_001898_220 Hb_000173_340--Hb_001898_220 Hb_000914_070 Hb_000914_070 Hb_000173_340--Hb_000914_070 Hb_000000_250 Hb_000000_250 Hb_000173_340--Hb_000000_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.69247 4.35474 0.927739 3.18312 0.854024 8.9492
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.51449 8.84985 4.35872 1.87927 1.20967

CAGE analysis