Hb_001635_090

Information

Type -
Description -
Location Contig1635: 64806-71268
Sequence    

Annotation

kegg
ID rcu:RCOM_0004440
description Ubiquitin carboxyl-terminal hydrolase, putative (EC:3.1.2.15)
nr
ID XP_011008463.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
swissprot
ID Q84WC6
description Ubiquitin carboxyl-terminal hydrolase 7 OS=Arabidopsis thaliana GN=UBP7 PE=1 SV=1
trembl
ID A0A067L0R2
description Ubiquitin carboxyl-terminal hydrolase OS=Jatropha curcas GN=JCGZ_24802 PE=3 SV=1
Gene Ontology
ID GO:0008234
description ubiquitin carboxyl-terminal hydrolase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14938: 64806-71244
cDNA
(Sanger)
(ID:Location)		 018_A23.ab1: 68453-71242

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001635_090 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
2 Hb_001408_040 0.0539857928 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
3 Hb_000116_410 0.063895076 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
4 Hb_001584_120 0.0642573227 - - PREDICTED: probable Xaa-Pro aminopeptidase 3 [Jatropha curcas]
5 Hb_007576_110 0.0672753976 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
6 Hb_000173_490 0.0673474017 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]
7 Hb_000120_670 0.0674535006 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
8 Hb_000923_010 0.0681489576 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
9 Hb_028512_020 0.0695256372 - - PREDICTED: protein S-acyltransferase 11 isoform X2 [Jatropha curcas]
10 Hb_001860_030 0.0699325853 - - PREDICTED: cleavage stimulation factor subunit 77 isoform X5 [Jatropha curcas]
11 Hb_000603_150 0.0700696677 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
12 Hb_000083_120 0.0710699517 - - transcription factor, putative [Ricinus communis]
13 Hb_000345_380 0.071470235 - - PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Jatropha curcas]
14 Hb_004324_130 0.0728418994 - - polypyrimidine tract binding protein, putative [Ricinus communis]
15 Hb_028285_010 0.073471886 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
16 Hb_005000_260 0.0744399746 - - recA family protein [Populus trichocarpa]
17 Hb_000225_040 0.0744779458 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
18 Hb_002784_020 0.0748772668 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
19 Hb_000613_050 0.0751712216 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
20 Hb_002213_070 0.0755839928 - - epsilon-adaptin family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001635_090 Hb_001635_090 Hb_001408_040 Hb_001408_040 Hb_001635_090--Hb_001408_040 Hb_000116_410 Hb_000116_410 Hb_001635_090--Hb_000116_410 Hb_001584_120 Hb_001584_120 Hb_001635_090--Hb_001584_120 Hb_007576_110 Hb_007576_110 Hb_001635_090--Hb_007576_110 Hb_000173_490 Hb_000173_490 Hb_001635_090--Hb_000173_490 Hb_000120_670 Hb_000120_670 Hb_001635_090--Hb_000120_670 Hb_001248_060 Hb_001248_060 Hb_001408_040--Hb_001248_060 Hb_000484_030 Hb_000484_030 Hb_001408_040--Hb_000484_030 Hb_002205_110 Hb_002205_110 Hb_001408_040--Hb_002205_110 Hb_002028_210 Hb_002028_210 Hb_001408_040--Hb_002028_210 Hb_010381_090 Hb_010381_090 Hb_001408_040--Hb_010381_090 Hb_010142_030 Hb_010142_030 Hb_000116_410--Hb_010142_030 Hb_000191_150 Hb_000191_150 Hb_000116_410--Hb_000191_150 Hb_004143_040 Hb_004143_040 Hb_000116_410--Hb_004143_040 Hb_001178_070 Hb_001178_070 Hb_000116_410--Hb_001178_070 Hb_028285_010 Hb_028285_010 Hb_000116_410--Hb_028285_010 Hb_001500_140 Hb_001500_140 Hb_001584_120--Hb_001500_140 Hb_000603_150 Hb_000603_150 Hb_001584_120--Hb_000603_150 Hb_001252_120 Hb_001252_120 Hb_001584_120--Hb_001252_120 Hb_000083_120 Hb_000083_120 Hb_001584_120--Hb_000083_120 Hb_028227_070 Hb_028227_070 Hb_001584_120--Hb_028227_070 Hb_000789_310 Hb_000789_310 Hb_007576_110--Hb_000789_310 Hb_000366_120 Hb_000366_120 Hb_007576_110--Hb_000366_120 Hb_014361_070 Hb_014361_070 Hb_007576_110--Hb_014361_070 Hb_000190_120 Hb_000190_120 Hb_007576_110--Hb_000190_120 Hb_001409_020 Hb_001409_020 Hb_007576_110--Hb_001409_020 Hb_002375_010 Hb_002375_010 Hb_007576_110--Hb_002375_010 Hb_031284_040 Hb_031284_040 Hb_000173_490--Hb_031284_040 Hb_000173_490--Hb_001409_020 Hb_000030_190 Hb_000030_190 Hb_000173_490--Hb_000030_190 Hb_010618_010 Hb_010618_010 Hb_000173_490--Hb_010618_010 Hb_000173_490--Hb_001248_060 Hb_003750_050 Hb_003750_050 Hb_000120_670--Hb_003750_050 Hb_000580_180 Hb_000580_180 Hb_000120_670--Hb_000580_180 Hb_003964_070 Hb_003964_070 Hb_000120_670--Hb_003964_070 Hb_000019_030 Hb_000019_030 Hb_000120_670--Hb_000019_030 Hb_001279_150 Hb_001279_150 Hb_000120_670--Hb_001279_150 Hb_000345_240 Hb_000345_240 Hb_000120_670--Hb_000345_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.8207 51.2978 36.2363 58.0504 49.5732 69.3673
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.5269 50.1989 45.5449 66.4516 30.0203

CAGE analysis