Hb_001635_100

Information

Type -
Description -
Location Contig1635: 75448-87306
Sequence    

Annotation

kegg
ID rcu:RCOM_1485180
description hypothetical protein
nr
ID XP_011008459.1
description PREDICTED: dentin sialophosphoprotein isoform X5 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9RQ62
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1485180 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14939: 75370-83118 , PASA_asmbl_14941: 85404-87205
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001635_100 0.0 - - PREDICTED: dentin sialophosphoprotein isoform X5 [Populus euphratica]
2 Hb_005062_070 0.0735013006 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
3 Hb_000030_010 0.0752118454 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
4 Hb_003297_030 0.0789037082 - - PREDICTED: uncharacterized protein LOC105640530 [Jatropha curcas]
5 Hb_004046_010 0.0805444934 - - PREDICTED: uncharacterized protein LOC105632478 isoform X2 [Jatropha curcas]
6 Hb_002477_160 0.084076875 - - hypothetical protein L484_013453 [Morus notabilis]
7 Hb_003861_080 0.0841445717 - - PREDICTED: DNA polymerase kappa isoform X2 [Jatropha curcas]
8 Hb_011918_080 0.0875840588 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
9 Hb_007943_080 0.0892684557 - - PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
10 Hb_001584_330 0.0901960904 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
11 Hb_000190_140 0.0928658512 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
12 Hb_000317_020 0.0930333721 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
13 Hb_175338_030 0.0931670101 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
14 Hb_009382_020 0.0932166196 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
15 Hb_000421_260 0.0952215578 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
16 Hb_000120_950 0.0956057643 - - PREDICTED: protein GRIP [Jatropha curcas]
17 Hb_000754_060 0.0956511526 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
18 Hb_000619_080 0.0959730039 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 21 [Jatropha curcas]
19 Hb_007558_140 0.0964288126 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
20 Hb_000179_210 0.0966489647 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]

Gene co-expression network

sample Hb_001635_100 Hb_001635_100 Hb_005062_070 Hb_005062_070 Hb_001635_100--Hb_005062_070 Hb_000030_010 Hb_000030_010 Hb_001635_100--Hb_000030_010 Hb_003297_030 Hb_003297_030 Hb_001635_100--Hb_003297_030 Hb_004046_010 Hb_004046_010 Hb_001635_100--Hb_004046_010 Hb_002477_160 Hb_002477_160 Hb_001635_100--Hb_002477_160 Hb_003861_080 Hb_003861_080 Hb_001635_100--Hb_003861_080 Hb_001454_210 Hb_001454_210 Hb_005062_070--Hb_001454_210 Hb_001030_120 Hb_001030_120 Hb_005062_070--Hb_001030_120 Hb_005062_070--Hb_004046_010 Hb_005062_070--Hb_000030_010 Hb_000190_140 Hb_000190_140 Hb_005062_070--Hb_000190_140 Hb_009111_050 Hb_009111_050 Hb_005062_070--Hb_009111_050 Hb_000120_950 Hb_000120_950 Hb_000030_010--Hb_000120_950 Hb_003609_040 Hb_003609_040 Hb_000030_010--Hb_003609_040 Hb_007547_010 Hb_007547_010 Hb_000030_010--Hb_007547_010 Hb_001623_420 Hb_001623_420 Hb_000030_010--Hb_001623_420 Hb_000392_300 Hb_000392_300 Hb_000030_010--Hb_000392_300 Hb_010863_080 Hb_010863_080 Hb_003297_030--Hb_010863_080 Hb_003297_030--Hb_003609_040 Hb_098993_010 Hb_098993_010 Hb_003297_030--Hb_098993_010 Hb_000179_210 Hb_000179_210 Hb_003297_030--Hb_000179_210 Hb_003297_030--Hb_000030_010 Hb_015306_020 Hb_015306_020 Hb_004046_010--Hb_015306_020 Hb_002890_340 Hb_002890_340 Hb_004046_010--Hb_002890_340 Hb_004046_010--Hb_002477_160 Hb_011918_080 Hb_011918_080 Hb_004046_010--Hb_011918_080 Hb_000446_090 Hb_000446_090 Hb_004046_010--Hb_000446_090 Hb_002307_100 Hb_002307_100 Hb_002477_160--Hb_002307_100 Hb_175338_030 Hb_175338_030 Hb_002477_160--Hb_175338_030 Hb_007558_140 Hb_007558_140 Hb_002477_160--Hb_007558_140 Hb_002477_160--Hb_000120_950 Hb_000754_060 Hb_000754_060 Hb_002477_160--Hb_000754_060 Hb_002477_160--Hb_011918_080 Hb_003861_080--Hb_004046_010 Hb_000110_160 Hb_000110_160 Hb_003861_080--Hb_000110_160 Hb_007943_080 Hb_007943_080 Hb_003861_080--Hb_007943_080 Hb_000805_090 Hb_000805_090 Hb_003861_080--Hb_000805_090 Hb_001157_030 Hb_001157_030 Hb_003861_080--Hb_001157_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.5533 15.5962 5.86492 6.29293 38.4582 28.7115
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.1345 26.5555 45.8223 14.4734 10.55

CAGE analysis