Hb_001635_120

Information

Type -
Description -
Location Contig1635: 140416-147648
Sequence    

Annotation

kegg
ID rcu:RCOM_1485610
description hypothetical protein
nr
ID XP_012069023.1
description PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
swissprot
ID P59278
description Uncharacterized protein At1g51745 OS=Arabidopsis thaliana GN=At1g51745 PE=2 SV=2
trembl
ID A0A067KXF3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24806 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14947: 140648-147639
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001635_120 0.0 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
2 Hb_000028_130 0.0492621597 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
3 Hb_000017_220 0.0575498516 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
4 Hb_005582_040 0.0589588327 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
5 Hb_000174_270 0.0629173098 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X1 [Jatropha curcas]
6 Hb_001999_290 0.0667273029 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
7 Hb_001473_110 0.0674972384 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
8 Hb_002234_090 0.0680734044 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
9 Hb_002830_010 0.0680860432 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
10 Hb_004030_080 0.0683959482 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
11 Hb_000640_040 0.0699953085 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]
12 Hb_003494_020 0.0713388252 - - ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
13 Hb_001716_020 0.0720271716 - - hydrolase, putative [Ricinus communis]
14 Hb_001157_240 0.0722033887 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
15 Hb_004435_030 0.0737096767 - - PREDICTED: F-box protein SKIP22 [Jatropha curcas]
16 Hb_003168_110 0.0749016541 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]
17 Hb_001377_190 0.0749061471 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
18 Hb_000890_060 0.0755295343 - - PREDICTED: sucrose nonfermenting 4-like protein [Jatropha curcas]
19 Hb_003498_080 0.0757247837 - - PREDICTED: decapping 5-like protein isoform X2 [Jatropha curcas]
20 Hb_004787_050 0.0759133821 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]

Gene co-expression network

sample Hb_001635_120 Hb_001635_120 Hb_000028_130 Hb_000028_130 Hb_001635_120--Hb_000028_130 Hb_000017_220 Hb_000017_220 Hb_001635_120--Hb_000017_220 Hb_005582_040 Hb_005582_040 Hb_001635_120--Hb_005582_040 Hb_000174_270 Hb_000174_270 Hb_001635_120--Hb_000174_270 Hb_001999_290 Hb_001999_290 Hb_001635_120--Hb_001999_290 Hb_001473_110 Hb_001473_110 Hb_001635_120--Hb_001473_110 Hb_031042_050 Hb_031042_050 Hb_000028_130--Hb_031042_050 Hb_000028_130--Hb_000017_220 Hb_001716_020 Hb_001716_020 Hb_000028_130--Hb_001716_020 Hb_000028_130--Hb_001473_110 Hb_003494_020 Hb_003494_020 Hb_000028_130--Hb_003494_020 Hb_000025_280 Hb_000025_280 Hb_000017_220--Hb_000025_280 Hb_000017_220--Hb_001473_110 Hb_004705_020 Hb_004705_020 Hb_000017_220--Hb_004705_020 Hb_001488_180 Hb_001488_180 Hb_000017_220--Hb_001488_180 Hb_002830_010 Hb_002830_010 Hb_005582_040--Hb_002830_010 Hb_001304_110 Hb_001304_110 Hb_005582_040--Hb_001304_110 Hb_000640_040 Hb_000640_040 Hb_005582_040--Hb_000640_040 Hb_001716_040 Hb_001716_040 Hb_005582_040--Hb_001716_040 Hb_004030_080 Hb_004030_080 Hb_005582_040--Hb_004030_080 Hb_000174_270--Hb_003494_020 Hb_000174_270--Hb_001999_290 Hb_000174_270--Hb_000028_130 Hb_062226_070 Hb_062226_070 Hb_000174_270--Hb_062226_070 Hb_000037_190 Hb_000037_190 Hb_000174_270--Hb_000037_190 Hb_001157_240 Hb_001157_240 Hb_001999_290--Hb_001157_240 Hb_004079_060 Hb_004079_060 Hb_001999_290--Hb_004079_060 Hb_005736_020 Hb_005736_020 Hb_001999_290--Hb_005736_020 Hb_001004_060 Hb_001004_060 Hb_001999_290--Hb_001004_060 Hb_001999_290--Hb_062226_070 Hb_000479_070 Hb_000479_070 Hb_001473_110--Hb_000479_070 Hb_001473_110--Hb_001488_180 Hb_001545_150 Hb_001545_150 Hb_001473_110--Hb_001545_150 Hb_000347_390 Hb_000347_390 Hb_001473_110--Hb_000347_390 Hb_000347_400 Hb_000347_400 Hb_001473_110--Hb_000347_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.29042 10.6155 6.61949 8.75139 5.04775 6.795
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.99415 5.40757 8.68729 7.68711 10.6663

CAGE analysis