Hb_001635_140

Information

Type -
Description -
Location Contig1635: 155692-157065
Sequence    

Annotation

kegg
ID rcu:RCOM_1485730
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_002515886.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q05737
description GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1
trembl
ID B9RQ67
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1485730 PE=3 SV=1
Gene Ontology
ID GO:0005773
description gtp-binding protein yptm2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14950: 155599-156732
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001635_140 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_004933_010 0.092145774 - - hypothetical protein POPTR_0018s10810g [Populus trichocarpa]
3 Hb_011628_010 0.0985904261 - - tonoplast intrinsic protein, putative [Ricinus communis]
4 Hb_004705_060 0.0996866048 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
5 Hb_009367_070 0.1087692044 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
6 Hb_000207_060 0.1093691771 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
7 Hb_000333_140 0.1123235363 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
8 Hb_000017_250 0.1123779298 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
9 Hb_003427_030 0.1157835159 - - -
10 Hb_015292_020 0.1208871112 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
11 Hb_000185_180 0.1212890374 - - hypothetical protein CISIN_1g037968mg, partial [Citrus sinensis]
12 Hb_004112_080 0.1221801399 - - PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
13 Hb_007477_010 0.1224938395 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA9 [Phoenix dactylifera]
14 Hb_002228_120 0.1236545842 - - potassium channel beta, putative [Ricinus communis]
15 Hb_002902_060 0.1269225786 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
16 Hb_001141_270 0.130693876 - - PREDICTED: uncharacterized protein LOC105632005 [Jatropha curcas]
17 Hb_000853_250 0.1318018853 - - Cellulose synthase A catalytic subunit 3 [UDP-forming], putative [Ricinus communis]
18 Hb_002307_150 0.1325902445 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA4-like [Jatropha curcas]
19 Hb_006483_070 0.132638592 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
20 Hb_025787_020 0.1334324532 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001635_140 Hb_001635_140 Hb_004933_010 Hb_004933_010 Hb_001635_140--Hb_004933_010 Hb_011628_010 Hb_011628_010 Hb_001635_140--Hb_011628_010 Hb_004705_060 Hb_004705_060 Hb_001635_140--Hb_004705_060 Hb_009367_070 Hb_009367_070 Hb_001635_140--Hb_009367_070 Hb_000207_060 Hb_000207_060 Hb_001635_140--Hb_000207_060 Hb_000333_140 Hb_000333_140 Hb_001635_140--Hb_000333_140 Hb_004933_010--Hb_011628_010 Hb_002228_120 Hb_002228_120 Hb_004933_010--Hb_002228_120 Hb_000413_120 Hb_000413_120 Hb_004933_010--Hb_000413_120 Hb_004933_010--Hb_000333_140 Hb_015292_020 Hb_015292_020 Hb_004933_010--Hb_015292_020 Hb_011628_010--Hb_000333_140 Hb_001136_080 Hb_001136_080 Hb_011628_010--Hb_001136_080 Hb_002307_150 Hb_002307_150 Hb_011628_010--Hb_002307_150 Hb_005211_170 Hb_005211_170 Hb_011628_010--Hb_005211_170 Hb_011628_010--Hb_009367_070 Hb_039075_010 Hb_039075_010 Hb_011628_010--Hb_039075_010 Hb_004705_060--Hb_009367_070 Hb_085829_010 Hb_085829_010 Hb_004705_060--Hb_085829_010 Hb_004705_060--Hb_000333_140 Hb_004112_080 Hb_004112_080 Hb_004705_060--Hb_004112_080 Hb_004705_060--Hb_000207_060 Hb_034713_010 Hb_034713_010 Hb_004705_060--Hb_034713_010 Hb_009367_070--Hb_034713_010 Hb_009367_070--Hb_004112_080 Hb_140627_040 Hb_140627_040 Hb_009367_070--Hb_140627_040 Hb_009367_070--Hb_000207_060 Hb_003090_220 Hb_003090_220 Hb_000207_060--Hb_003090_220 Hb_001818_010 Hb_001818_010 Hb_000207_060--Hb_001818_010 Hb_000331_630 Hb_000331_630 Hb_000207_060--Hb_000331_630 Hb_000408_060 Hb_000408_060 Hb_000207_060--Hb_000408_060 Hb_000333_140--Hb_005211_170 Hb_000333_140--Hb_001136_080 Hb_000333_140--Hb_015292_020 Hb_000333_140--Hb_002307_150 Hb_000310_040 Hb_000310_040 Hb_000333_140--Hb_000310_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.111488 2.02139 5.09775 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0799519 0 0.295181 0.618404

CAGE analysis