Hb_001635_170

Information

Type -
Description -
Location Contig1635: 168444-170206
Sequence    

Annotation

kegg
ID rcu:RCOM_1485760
description chmp1, putative
nr
ID KDP40812.1
description hypothetical protein JCGZ_24811 [Jatropha curcas]
swissprot
ID Q8LE58
description ESCRT-related protein CHMP1A OS=Arabidopsis thaliana GN=CHMP1A PE=1 SV=1
trembl
ID A0A067KXF7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24811 PE=4 SV=1
Gene Ontology
ID GO:0005622
description charged multivesicular body protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14953: 168488-170108 , PASA_asmbl_14954: 170683-174779
cDNA
(Sanger)
(ID:Location)		 009_P23.ab1: 168551-169937 , 030_G04.ab1: 168767-170105

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001635_170 0.0 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
2 Hb_000327_120 0.057395842 - - FGFR1 oncogene partner, putative [Ricinus communis]
3 Hb_010661_030 0.0610435032 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
4 Hb_008803_090 0.0624635572 - - PREDICTED: COP9 signalosome complex subunit 6a [Jatropha curcas]
5 Hb_033153_050 0.0626502282 transcription factor TF Family: VOZ conserved hypothetical protein [Ricinus communis]
6 Hb_000661_250 0.0636738666 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
7 Hb_022250_030 0.064708356 - - conserved hypothetical protein [Ricinus communis]
8 Hb_029920_050 0.0660180308 - - PREDICTED: putative HVA22-like protein g [Jatropha curcas]
9 Hb_002685_140 0.0668487304 - - PREDICTED: membrin-11 [Jatropha curcas]
10 Hb_004310_130 0.067977589 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
11 Hb_000092_100 0.068641701 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
12 Hb_007919_060 0.0690846353 - - PREDICTED: UPF0047 protein C4A8.02c [Jatropha curcas]
13 Hb_001259_090 0.0694789573 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
14 Hb_007218_080 0.070284007 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
15 Hb_150360_030 0.0706363817 - - PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Jatropha curcas]
16 Hb_011689_080 0.0709964631 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
17 Hb_000059_330 0.0715340437 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
18 Hb_033843_010 0.0739417188 - - PREDICTED: cell division control protein 2 homolog A isoform X1 [Jatropha curcas]
19 Hb_002233_150 0.0743286985 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
20 Hb_096563_010 0.0743834792 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]

Gene co-expression network

sample Hb_001635_170 Hb_001635_170 Hb_000327_120 Hb_000327_120 Hb_001635_170--Hb_000327_120 Hb_010661_030 Hb_010661_030 Hb_001635_170--Hb_010661_030 Hb_008803_090 Hb_008803_090 Hb_001635_170--Hb_008803_090 Hb_033153_050 Hb_033153_050 Hb_001635_170--Hb_033153_050 Hb_000661_250 Hb_000661_250 Hb_001635_170--Hb_000661_250 Hb_022250_030 Hb_022250_030 Hb_001635_170--Hb_022250_030 Hb_002685_140 Hb_002685_140 Hb_000327_120--Hb_002685_140 Hb_007951_060 Hb_007951_060 Hb_000327_120--Hb_007951_060 Hb_054865_100 Hb_054865_100 Hb_000327_120--Hb_054865_100 Hb_001595_030 Hb_001595_030 Hb_000327_120--Hb_001595_030 Hb_006185_050 Hb_006185_050 Hb_000327_120--Hb_006185_050 Hb_007576_040 Hb_007576_040 Hb_010661_030--Hb_007576_040 Hb_001404_100 Hb_001404_100 Hb_010661_030--Hb_001404_100 Hb_007154_020 Hb_007154_020 Hb_010661_030--Hb_007154_020 Hb_002233_150 Hb_002233_150 Hb_010661_030--Hb_002233_150 Hb_003069_010 Hb_003069_010 Hb_010661_030--Hb_003069_010 Hb_106552_050 Hb_106552_050 Hb_008803_090--Hb_106552_050 Hb_001926_030 Hb_001926_030 Hb_008803_090--Hb_001926_030 Hb_008803_090--Hb_001595_030 Hb_005532_050 Hb_005532_050 Hb_008803_090--Hb_005532_050 Hb_001677_210 Hb_001677_210 Hb_008803_090--Hb_001677_210 Hb_001862_190 Hb_001862_190 Hb_033153_050--Hb_001862_190 Hb_005306_110 Hb_005306_110 Hb_033153_050--Hb_005306_110 Hb_007894_140 Hb_007894_140 Hb_033153_050--Hb_007894_140 Hb_029920_050 Hb_029920_050 Hb_033153_050--Hb_029920_050 Hb_033843_010 Hb_033843_010 Hb_033153_050--Hb_033843_010 Hb_001259_090 Hb_001259_090 Hb_000661_250--Hb_001259_090 Hb_096563_010 Hb_096563_010 Hb_000661_250--Hb_096563_010 Hb_000462_140 Hb_000462_140 Hb_000661_250--Hb_000462_140 Hb_002007_060 Hb_002007_060 Hb_000661_250--Hb_002007_060 Hb_000661_250--Hb_002233_150 Hb_002784_050 Hb_002784_050 Hb_022250_030--Hb_002784_050 Hb_007919_060 Hb_007919_060 Hb_022250_030--Hb_007919_060 Hb_000613_090 Hb_000613_090 Hb_022250_030--Hb_000613_090 Hb_022250_030--Hb_000462_140 Hb_000699_130 Hb_000699_130 Hb_022250_030--Hb_000699_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
401.882 175.228 191.537 132.527 288.172 325.602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
352.008 296.745 217.248 144.508 95.226

CAGE analysis